1 HAMP#1
184-253 aa · 70 aa · 14.1% of protein
Raw token
HAMP:184:0.0000000000000368:253:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DQQ01_RS01825
Histidine kinase, Classic
Blautia argi · GCF_003287895
ClassHKTypeClassicLength498 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003287895#DQQ01_RS01825Stable P2CS identifier used across views.
GenomeGCF_003287895Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length498 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage250 / 498 aa (50.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa498 aa
Domain-by-domain annotation3 items
2 HisKA#2
267-331 aa · 65 aa · 13.1% of protein
Raw token
HisKA:267:0.00000000000000292:331:65:643 HATPase_c#3
378-492 aa · 115 aa · 23.1% of protein
Raw token
HATPase_c:378:1.32e-32:492:115:109- Raw architecture: HAMP:184:0.0000000000000368:253:70:69#HisKA:267:0.00000000000000292:331:65:64#HATPase_c:378:1.32e-32:492:115:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003287895::NZ_CP030280.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span353269-355447Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDQQ01_01830RefSeq proteinWP_111917932.1
Context group ID
GCF_003287895::NZ_CP030280.1::G00004Context members
DQQ01_RS01825DQQ01_RS01830
Partner locus tags
DQQ01_RS01825DQQ01_RS01830
Partner old locus tags
DQQ01_01830DQQ01_01835
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_111917932.1Primary protein accession used for annex mappings.
UniProt accessionA0A2Z4U8C7Primary UniProt accession resolved in the annex database.
UniProt IDA0A2Z4U8C7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDQQ01_RS01825Primary locus identifier stored in the genes table.
Old locus tagDQQ01_01830Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP030280.1Sequence record reported by the local genomic context database.
Genomic interval353 269-354 765 nt1 497 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span353 269-355 447 ntGCF_003287895::NZ_CP030280.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003287895::NZ_CP030280.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP030280.1All displayed genes belong to this local TCS context.
Neighborhood span353 269-355 447 nt2 179 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
353 269 nt355 447 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DQQ01_RS01825GCF_003287895#DQQ01_RS01825
HKClassicCurrent focus
353 269-354 765 nt · Forward (+)
DQQ01_RS01830GCF_003287895#DQQ01_RS01830
RROmpR
354 758-355 447 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003287895#DQQ01_RS01825The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1488377
Simplified PFAM architecture for HKOC_1488377
PFAM domain coverage: 230 / 498 aa (46.2%)
1 aa498 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[201-253] | HisKA[266-330] | HATPase_c[379-490]
- Domain count: 3
- Matched identifier: HKOC_1488377
- Positioned domains: HAMP 201-253 ; HisKA 266-330 ; HATPase_c 379-490
Cluster members and taxonomy
Representative gene: GCF_003287895#DQQ01_RS01825
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 912 897 · GCF_003287895
AssemblyASM328789v1 · Complete Genomereference genome · haploid
Genome composition3 297 975 bp · 42,0% GCBlautia argi
Signal transduction countsGenes 100 · HK 50 · RR 50CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key