1 HAMP#1
76-146 aa · 71 aa · 19.6% of protein
Raw token
HAMP:76:0.0000000000936:146:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DQQ01_RS00425
Histidine kinase, Classic
Blautia argi · GCF_003287895
ClassHKTypeClassicLength362 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003287895#DQQ01_RS00425Stable P2CS identifier used across views.
GenomeGCF_003287895Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length362 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage238 / 362 aa (65.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa362 aa
Domain-by-domain annotation3 items
2 HisKA#2
151-212 aa · 62 aa · 17.1% of protein
Raw token
HisKA:151:0.000000000000555:212:62:643 HATPase_c#3
257-361 aa · 105 aa · 29.0% of protein
Raw token
HATPase_c:257:1.35e-30:361:109:109- Raw architecture: HAMP:76:0.0000000000936:146:71:69#HisKA:151:0.000000000000555:212:62:64#HATPase_c:257:1.35e-30:361:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003287895::NZ_CP030280.1::G00002
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span83161-84249Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDQQ01_00425RefSeq proteinWP_111917755.1
Context group ID
GCF_003287895::NZ_CP030280.1::G00002Context members
DQQ01_RS00425
Partner locus tags
DQQ01_RS00425
Partner old locus tags
DQQ01_00425
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_111917755.1Primary protein accession used for annex mappings.
UniProt accessionA0A2Z4U7M5Primary UniProt accession resolved in the annex database.
UniProt IDA0A2Z4U7M5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDQQ01_RS00425Primary locus identifier stored in the genes table.
Old locus tagDQQ01_00425Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP030280.1Sequence record reported by the local genomic context database.
Genomic interval83 161-84 249 nt1 089 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span83 161-84 249 ntGCF_003287895::NZ_CP030280.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003287895::NZ_CP030280.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP030280.1All displayed genes belong to this local TCS context.
Neighborhood span83 161-84 249 nt1 089 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
83 161 nt84 249 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DQQ01_RS00425GCF_003287895#DQQ01_RS00425
HKClassicCurrent focus
83 161-84 249 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003287895#DQQ01_RS00425The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2736885
Simplified PFAM architecture for HKOC_2736885
PFAM domain coverage: 221 / 362 aa (61.0%)
1 aa362 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[94-146] | HisKA[151-213] | HATPase_c[257-361]
- Domain count: 3
- Matched identifier: HKOC_2736885
- Positioned domains: HAMP 94-146 ; HisKA 151-213 ; HATPase_c 257-361
Cluster members and taxonomy
Representative gene: GCF_003287895#DQQ01_RS00425
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 912 897 · GCF_003287895
AssemblyASM328789v1 · Complete Genomereference genome · haploid
Genome composition3 297 975 bp · 42,0% GCBlautia argi
Signal transduction countsGenes 100 · HK 50 · RR 50CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key