1 Response_reg#1
5-113 aa · 109 aa · 22.4% of protein
Raw token
Response_reg:5:2.33e-26:113:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C4N21_RS13840
Response regulator, unclassified
Faecalibacterium prausnitzii · GCF_003287475
ClassRRTypeunclassifiedLength486 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003287475#C4N21_RS13840Stable P2CS identifier used across views.
GenomeGCF_003287475Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length486 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage149 / 486 aa (30.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa486 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
445-484 aa · 40 aa · 8.2% of protein
Raw token
HTH_AraC:445:0.00000000256:484:40:42- Raw architecture: Response_reg:5:2.33e-26:113:109:111#HTH_AraC:445:0.00000000256:484:40:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003287475::NZ_PRLF01000031.1::G00020
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span11598-13058Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC4N21_13830RefSeq proteinWP_112122123.1
Context group ID
GCF_003287475::NZ_PRLF01000031.1::G00020Context members
C4N21_RS13840
Partner locus tags
C4N21_RS13840
Partner old locus tags
C4N21_13830
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_112122123.1Primary protein accession used for annex mappings.
UniProt accessionA0ABV1BLC7Primary UniProt accession resolved in the annex database.
UniProt IDA0ABV1BLC7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC4N21_RS13840Primary locus identifier stored in the genes table.
Old locus tagC4N21_13830Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PRLF01000031.1Sequence record reported by the local genomic context database.
Genomic interval11 598-13 058 nt1 461 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span11 598-13 058 ntGCF_003287475::NZ_PRLF01000031.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003287475::NZ_PRLF01000031.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PRLF01000031.1All displayed genes belong to this local TCS context.
Neighborhood span11 598-13 058 nt1 461 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
11 598 nt13 058 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
C4N21_RS13840GCF_003287475#C4N21_RS13840
RRunclassifiedCurrent focus
11 598-13 058 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003287475#C4N21_RS13840The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0172992
Simplified PFAM architecture for RROC_0172992
PFAM domain coverage: 188 / 486 aa (38.7%)
1 aa486 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-113] | HTH_18[406-484]
- Domain count: 2
- Matched identifier: RROC_0172992
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; HTH_18 406-484 ; HTH_18 406-484
Cluster members and taxonomy
Representative gene: GCF_003287475#C4N21_RS13840
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_003287475
AssemblyASM328747v1 · Contighaploid
Genome composition3 018 140 bp · 56,5% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 50 · HK 22 · RR 26CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key