1 HAMP#1
265-332 aa · 68 aa · 12.1% of protein
Raw token
HAMP:265:0.0000000359:332:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C4N21_RS13815
Histidine kinase, Classic
Faecalibacterium prausnitzii · GCF_003287475
ClassHKTypeClassicLength563 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003287475#C4N21_RS13815Stable P2CS identifier used across views.
GenomeGCF_003287475Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length563 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 563 aa (43.9%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa563 aa
Domain-by-domain annotation3 items
2 His_kinase#2
349-426 aa · 78 aa · 13.9% of protein
Raw token
His_kinase:349:6.07e-25:426:79:803 HATPase_c#3
447-547 aa · 101 aa · 17.9% of protein
Raw token
HATPase_c:447:0.000000000368:547:109:109- Raw architecture: HAMP:265:0.0000000359:332:68:69#His_kinase:349:6.07e-25:426:79:80#HATPase_c:447:0.000000000368:547:109:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003287475::NZ_PRLF01000031.1::G00019
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span4365-6056Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC4N21_13805RefSeq proteinWP_181573340.1
Context group ID
GCF_003287475::NZ_PRLF01000031.1::G00019Context members
C4N21_RS13815
Partner locus tags
C4N21_RS13815
Partner old locus tags
C4N21_13805
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_181573340.1Primary protein accession used for annex mappings.
UniProt accessionA0ABV1BMM1Primary UniProt accession resolved in the annex database.
UniProt IDA0ABV1BMM1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC4N21_RS13815Primary locus identifier stored in the genes table.
Old locus tagC4N21_13805Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PRLF01000031.1Sequence record reported by the local genomic context database.
Genomic interval4 365-6 056 nt1 692 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 365-6 056 ntGCF_003287475::NZ_PRLF01000031.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003287475::NZ_PRLF01000031.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PRLF01000031.1All displayed genes belong to this local TCS context.
Neighborhood span4 365-6 056 nt1 692 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 365 nt6 056 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
C4N21_RS13815GCF_003287475#C4N21_RS13815
HKClassicCurrent focus
4 365-6 056 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_023347275#MTP38_RS01605Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1084109
Simplified PFAM architecture for HKOC_1084109
PFAM domain coverage: 178 / 595 aa (29.9%)
1 aa595 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[382-458] | HATPase_c[478-578]
- Domain count: 2
- Matched identifier: HKOC_1084109
- Positioned domains: His_kinase 382-458 ; HATPase_c 478-578
Cluster members and taxonomy
Representative gene: GCF_023347275#MTP38_RS01605
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_003287475
AssemblyASM328747v1 · Contighaploid
Genome composition3 018 140 bp · 56,5% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 50 · HK 22 · RR 26CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key