1 HAMP#1
295-365 aa · 71 aa · 11.7% of protein
Raw token
HAMP:295:0.0000000665:365:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C4N21_RS12465
Histidine kinase, Classic
Faecalibacterium prausnitzii · GCF_003287475
ClassHKTypeClassicLength605 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003287475#C4N21_RS12465Stable P2CS identifier used across views.
GenomeGCF_003287475Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length605 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage261 / 605 aa (43.1%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa605 aa
Domain-by-domain annotation3 items
2 His_kinase#2
382-461 aa · 80 aa · 13.2% of protein
Raw token
His_kinase:382:2.06e-29:461:80:803 HATPase_c#3
484-593 aa · 110 aa · 18.2% of protein
Raw token
HATPase_c:484:0.0000000000000078:593:110:109- Raw architecture: HAMP:295:0.0000000665:365:72:69#His_kinase:382:2.06e-29:461:80:80#HATPase_c:484:0.0000000000000078:593:110:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003287475::NZ_PRLF01000023.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8420-11474Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC4N21_12455RefSeq proteinWP_112121950.1
Context group ID
GCF_003287475::NZ_PRLF01000023.1::G00016Context members
C4N21_RS12460C4N21_RS12465
Partner locus tags
C4N21_RS12460C4N21_RS12465
Partner old locus tags
C4N21_12450C4N21_12455
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_112121950.1Primary protein accession used for annex mappings.
UniProt accessionA0A329UQV6Primary UniProt accession resolved in the annex database.
UniProt IDA0A329UQV6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC4N21_RS12465Primary locus identifier stored in the genes table.
Old locus tagC4N21_12455Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PRLF01000023.1Sequence record reported by the local genomic context database.
Genomic interval9 657-11 474 nt1 818 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span8 420-11 474 ntGCF_003287475::NZ_PRLF01000023.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003287475::NZ_PRLF01000023.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PRLF01000023.1All displayed genes belong to this local TCS context.
Neighborhood span8 420-11 474 nt3 055 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 420 nt11 474 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
C4N21_RS12460GCF_003287475#C4N21_RS12460
RRunclassified
8 420-9 682 nt · Reverse (-)
C4N21_RS12465GCF_003287475#C4N21_RS12465
HKClassicCurrent focus
9 657-11 474 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003287475#C4N21_RS12465The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1029344
Simplified PFAM architecture for HKOC_1029344
PFAM domain coverage: 237 / 605 aa (39.2%)
1 aa605 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[316-365] | His_kinase[383-460] | HATPase_c[484-592]
- Domain count: 3
- Matched identifier: HKOC_1029344
- Positioned domains: HAMP 316-365 ; His_kinase 383-460 ; HATPase_c 484-592
Cluster members and taxonomy
Representative gene: GCF_003287475#C4N21_RS12465
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_003287475
AssemblyASM328747v1 · Contighaploid
Genome composition3 018 140 bp · 56,5% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 50 · HK 22 · RR 26CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key