1 HAMP#1
89-156 aa · 68 aa · 17.8% of protein
Raw token
HAMP:89:0.000000000027:156:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C4N21_RS12330
Histidine kinase, Classic
Faecalibacterium prausnitzii · GCF_003287475
ClassHKTypeClassicLength382 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003287475#C4N21_RS12330Stable P2CS identifier used across views.
GenomeGCF_003287475Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length382 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage242 / 382 aa (63.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa382 aa
Domain-by-domain annotation3 items
2 HisKA#2
161-226 aa · 66 aa · 17.3% of protein
Raw token
HisKA:161:0.0000000000129:226:66:643 HATPase_c#3
273-380 aa · 108 aa · 28.3% of protein
Raw token
HATPase_c:273:1.24e-32:380:108:109- Raw architecture: HAMP:89:0.000000000027:156:68:69#HisKA:161:0.0000000000129:226:66:64#HATPase_c:273:1.24e-32:380:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003287475::NZ_PRLF01000022.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span27547-29369Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC4N21_12320RefSeq proteinWP_005922037.1
Context group ID
GCF_003287475::NZ_PRLF01000022.1::G00015Context members
C4N21_RS12325C4N21_RS12330
Partner locus tags
C4N21_RS12325C4N21_RS12330
Partner old locus tags
C4N21_12315C4N21_12320
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005922037.1Primary protein accession used for annex mappings.
UniProt accessionA8S7V4Primary UniProt accession resolved in the annex database.
UniProt IDA8S7V4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC4N21_RS12330Primary locus identifier stored in the genes table.
Old locus tagC4N21_12320Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PRLF01000022.1Sequence record reported by the local genomic context database.
Genomic interval28 221-29 369 nt1 149 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span27 547-29 369 ntGCF_003287475::NZ_PRLF01000022.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003287475::NZ_PRLF01000022.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PRLF01000022.1All displayed genes belong to this local TCS context.
Neighborhood span27 547-29 369 nt1 823 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
27 547 nt29 369 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
C4N21_RS12325GCF_003287475#C4N21_RS12325
RROmpR
27 547-28 224 nt · Forward (+)
C4N21_RS12330GCF_003287475#C4N21_RS12330
HKClassicCurrent focus
28 221-29 369 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154385#FAEPRAM212_RS04055Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2590961
Simplified PFAM architecture for HKOC_2590961
PFAM domain coverage: 227 / 382 aa (59.4%)
1 aa382 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[103-155] | HisKA[161-226] | HATPase_c[272-379]
- Domain count: 3
- Matched identifier: HKOC_2590961
- Positioned domains: HAMP 103-155 ; HisKA 161-226 ; HATPase_c 272-379
Cluster members and taxonomy
Representative gene: GCF_000154385#FAEPRAM212_RS04055
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_003287475
AssemblyASM328747v1 · Contighaploid
Genome composition3 018 140 bp · 56,5% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 50 · HK 22 · RR 26CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key