1 HisKA#1
357-423 aa · 67 aa · 9.1% of protein
Raw token
HisKA:357:0.000000000000048:423:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C4N21_RS08330
Histidine kinase, Hybrid
Faecalibacterium prausnitzii · GCF_003287475
ClassHKTypeHybridLength734 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003287475#C4N21_RS08330Stable P2CS identifier used across views.
GenomeGCF_003287475Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length734 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage298 / 734 aa (40.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa734 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
470-587 aa · 118 aa · 16.1% of protein
Raw token
HATPase_c:470:3.28e-26:587:119:1093 Response_reg#3
610-722 aa · 113 aa · 15.4% of protein
Raw token
Response_reg:610:3.72e-29:722:113:111- Raw architecture: HisKA:357:0.000000000000048:423:67:64#HATPase_c:470:3.28e-26:587:119:109#Response_reg:610:3.72e-29:722:113:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003287475::NZ_PRLF01000010.1::G00001
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span16202-18406Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC4N21_08320RefSeq proteinWP_112121533.1
Context group ID
GCF_003287475::NZ_PRLF01000010.1::G00001Context members
C4N21_RS08330
Partner locus tags
C4N21_RS08330
Partner old locus tags
C4N21_08320
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_112121533.1Primary protein accession used for annex mappings.
UniProt accessionA0A329UNR5Primary UniProt accession resolved in the annex database.
UniProt IDA0A329UNR5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC4N21_RS08330Primary locus identifier stored in the genes table.
Old locus tagC4N21_08320Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PRLF01000010.1Sequence record reported by the local genomic context database.
Genomic interval16 202-18 406 nt2 205 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span16 202-18 406 ntGCF_003287475::NZ_PRLF01000010.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003287475::NZ_PRLF01000010.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PRLF01000010.1All displayed genes belong to this local TCS context.
Neighborhood span16 202-18 406 nt2 205 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
16 202 nt18 406 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
C4N21_RS08330GCF_003287475#C4N21_RS08330
HKHybridCurrent focus
16 202-18 406 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003287475#C4N21_RS08330The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0704443
Simplified PFAM architecture for HKOC_0704443
PFAM domain coverage: 298 / 734 aa (40.6%)
1 aa734 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[357-423] | HATPase_c[471-586] | Response_reg[610-724]
- Domain count: 3
- Matched identifier: HKOC_0704443
- Positioned domains: HisKA 357-423 ; HATPase_c 471-586 ; Response_reg 610-724
Cluster members and taxonomy
Representative gene: GCF_003287475#C4N21_RS08330
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_003287475
AssemblyASM328747v1 · Contighaploid
Genome composition3 018 140 bp · 56,5% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 50 · HK 22 · RR 26CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key