1 Response_reg#1
7-119 aa · 113 aa · 14.3% of protein
Raw token
Response_reg:7:1.94e-25:119:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C4N21_RS07170
Response regulator, RpfG family
Faecalibacterium prausnitzii · GCF_003287475
ClassRRTypeRpfGLength791 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003287475#C4N21_RS07170Stable P2CS identifier used across views.
GenomeGCF_003287475Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regHDGGDEF
Protein length791 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage364 / 791 aa (46.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 HD,1 GGDEFSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa791 aa
Domain-by-domain annotation3 items
2 HD#2
195-301 aa · 107 aa · 13.5% of protein
Raw token
HD:195:0.000000000000195:301:107:1103 GGDEF#3
644-787 aa · 144 aa · 18.2% of protein
Raw token
GGDEF:644:1.94e-39:787:157:160- Raw architecture: Response_reg:7:1.94e-25:119:114:111#HD:195:0.000000000000195:301:107:110#GGDEF:644:1.94e-39:787:157:160
- Domain description: 1 Response_reg,1 HD,1 GGDEF
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003287475::NZ_PRLF01000007.1::G00028
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span112563-114938Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC4N21_07160RefSeq proteinWP_112121411.1
Context group ID
GCF_003287475::NZ_PRLF01000007.1::G00028Context members
C4N21_RS07170
Partner locus tags
C4N21_RS07170
Partner old locus tags
C4N21_07160
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_112121411.1Primary protein accession used for annex mappings.
UniProt accessionA0A329UTR3Primary UniProt accession resolved in the annex database.
UniProt IDA0A329UTR3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC4N21_RS07170Primary locus identifier stored in the genes table.
Old locus tagC4N21_07160Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PRLF01000007.1Sequence record reported by the local genomic context database.
Genomic interval112 563-114 938 nt2 376 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span112 563-114 938 ntGCF_003287475::NZ_PRLF01000007.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003287475::NZ_PRLF01000007.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PRLF01000007.1All displayed genes belong to this local TCS context.
Neighborhood span112 563-114 938 nt2 376 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
112 563 nt114 938 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
C4N21_RS07170GCF_003287475#C4N21_RS07170
RRRpfGCurrent focus
112 563-114 938 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003287475#C4N21_RS07170The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HD_5 + GGDEF3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0016422
Simplified PFAM architecture for RROC_0016422
PFAM domain coverage: 392 / 791 aa (49.6%)
1 aa791 aa
Response_regHD_5GGDEF
- Simplified architecture: Response_reg + HD_5 + GGDEF
- Raw architecture: Response_reg[7-118] | HD_5[186-320] | GGDEF[644-788]
- Domain count: 3
- Matched identifier: RROC_0016422
- Positioned domains: Response_reg 7-118 ; Response_reg 7-118 ; HD_5 186-320 ; HD_5 186-320 ; GGDEF 644-788 ; GGDEF 644-788
Cluster members and taxonomy
Representative gene: GCF_003287475#C4N21_RS07170
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_003287475
AssemblyASM328747v1 · Contighaploid
Genome composition3 018 140 bp · 56,5% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 50 · HK 22 · RR 26CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key