1 HisKA#1
123-189 aa · 67 aa · 19.5% of protein
Raw token
HisKA:123:0.000000115:189:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C4N21_RS04435
Histidine kinase, Classic
Faecalibacterium prausnitzii · GCF_003287475
ClassHKTypeClassicLength343 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003287475#C4N21_RS04435Stable P2CS identifier used across views.
GenomeGCF_003287475Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length343 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 343 aa (49.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa343 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
241-341 aa · 101 aa · 29.4% of protein
Raw token
HATPase_c:241:1.83e-27:341:101:109- Raw architecture: HisKA:123:0.000000115:189:67:64#HATPase_c:241:1.83e-27:341:101:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003287475::NZ_PRLF01000004.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span13776-15496Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC4N21_04430RefSeq proteinWP_112121142.1
Context group ID
GCF_003287475::NZ_PRLF01000004.1::G00026Context members
C4N21_RS04430C4N21_RS04435
Partner locus tags
C4N21_RS04430C4N21_RS04435
Partner old locus tags
C4N21_04425C4N21_04430
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_112121142.1Primary protein accession used for annex mappings.
UniProt accessionA0A329UV49Primary UniProt accession resolved in the annex database.
UniProt IDA0A329UV49_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC4N21_RS04435Primary locus identifier stored in the genes table.
Old locus tagC4N21_04430Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PRLF01000004.1Sequence record reported by the local genomic context database.
Genomic interval14 465-15 496 nt1 032 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span13 776-15 496 ntGCF_003287475::NZ_PRLF01000004.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003287475::NZ_PRLF01000004.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PRLF01000004.1All displayed genes belong to this local TCS context.
Neighborhood span13 776-15 496 nt1 721 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
13 776 nt15 496 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
C4N21_RS04430GCF_003287475#C4N21_RS04430
RROmpR
13 776-14 468 nt · Forward (+)
C4N21_RS04435GCF_003287475#C4N21_RS04435
HKClassicCurrent focus
14 465-15 496 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003287475#C4N21_RS04435The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2828748
Simplified PFAM architecture for HKOC_2828748
PFAM domain coverage: 174 / 343 aa (50.7%)
1 aa343 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[124-189] | HATPase_c[235-342]
- Domain count: 2
- Matched identifier: HKOC_2828748
- Positioned domains: HisKA 124-189 ; HATPase_c 235-342
Cluster members and taxonomy
Representative gene: GCF_003287475#C4N21_RS04435
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_003287475
AssemblyASM328747v1 · Contighaploid
Genome composition3 018 140 bp · 56,5% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 50 · HK 22 · RR 26CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key