1 Response_reg#1
4-114 aa · 111 aa · 48.3% of protein
Raw token
Response_reg:4:6.33e-32:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C4N21_RS04430
Response regulator OmpR family
Faecalibacterium prausnitzii · GCF_003287475
ClassRRTypeOmpRLength230 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003287475#C4N21_RS04430Stable P2CS identifier used across views.
GenomeGCF_003287475Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 230 aa (81.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa230 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-224 aa · 77 aa · 33.5% of protein
Raw token
Trans_reg_C:148:3.66e-27:224:78:77- Raw architecture: Response_reg:4:6.33e-32:114:111:111#Trans_reg_C:148:3.66e-27:224:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003287475::NZ_PRLF01000004.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span13776-15496Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC4N21_04425RefSeq proteinWP_112121141.1
Context group ID
GCF_003287475::NZ_PRLF01000004.1::G00026Context members
C4N21_RS04430C4N21_RS04435
Partner locus tags
C4N21_RS04430C4N21_RS04435
Partner old locus tags
C4N21_04425C4N21_04430
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_112121141.1Primary protein accession used for annex mappings.
UniProt accessionA0A329UTW3Primary UniProt accession resolved in the annex database.
UniProt IDA0A329UTW3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC4N21_RS04430Primary locus identifier stored in the genes table.
Old locus tagC4N21_04425Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PRLF01000004.1Sequence record reported by the local genomic context database.
Genomic interval13 776-14 468 nt693 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span13 776-15 496 ntGCF_003287475::NZ_PRLF01000004.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003287475::NZ_PRLF01000004.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PRLF01000004.1All displayed genes belong to this local TCS context.
Neighborhood span13 776-15 496 nt1 721 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
13 776 nt15 496 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
C4N21_RS04430GCF_003287475#C4N21_RS04430
RROmpRCurrent focus
13 776-14 468 nt · Forward (+)
C4N21_RS04435GCF_003287475#C4N21_RS04435
HKClassic
14 465-15 496 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003287475#C4N21_RS04430The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1210827
Simplified PFAM architecture for RROC_1210827
PFAM domain coverage: 186 / 230 aa (80.9%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[148-223]
- Domain count: 2
- Matched identifier: RROC_1210827
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 148-223 ; Trans_reg_C 148-223
Cluster members and taxonomy
Representative gene: GCF_003287475#C4N21_RS04430
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_003287475
AssemblyASM328747v1 · Contighaploid
Genome composition3 018 140 bp · 56,5% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 50 · HK 22 · RR 26CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key