1 Response_reg#1
5-114 aa · 110 aa · 49.3% of protein
Raw token
Response_reg:5:1.68e-41:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DR013_RS10510
Response regulator OmpR family
Clostridium paraputrificum · GCF_003284655
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003284655#DR013_RS10510Stable P2CS identifier used across views.
GenomeGCF_003284655Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 223 aa (81.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-220 aa · 71 aa · 31.8% of protein
Raw token
Trans_reg_C:150:1.77e-28:220:74:77- Raw architecture: Response_reg:5:1.68e-41:114:111:111#Trans_reg_C:150:1.77e-28:220:74:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003284655::NZ_QGMT01000016.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span37673-39840Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_003284655::NZ_QGMT01000016.1::G00012Context members
DR013_RS10505DR013_RS10510
Partner locus tags
DR013_RS10505DR013_RS10510
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_049178634.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDR013_RS10510Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_QGMT01000016.1Sequence record reported by the local genomic context database.
Genomic interval39 169-39 840 nt672 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span37 673-39 840 ntGCF_003284655::NZ_QGMT01000016.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003284655::NZ_QGMT01000016.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QGMT01000016.1All displayed genes belong to this local TCS context.
Neighborhood span37 673-39 840 nt2 168 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
37 673 nt39 840 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DR013_RS10505GCF_003284655#DR013_RS10505
HKClassic
37 673-39 169 nt · Reverse (-)
DR013_RS10510GCF_003284655#DR013_RS10510
RROmpRCurrent focus
39 169-39 840 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003284655#DR013_RS10510The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1599620
Simplified PFAM architecture for RROC_1599620
PFAM domain coverage: 181 / 223 aa (81.2%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[150-220]
- Domain count: 2
- Matched identifier: RROC_1599620
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; Trans_reg_C 150-220 ; Trans_reg_C 150-220
Cluster members and taxonomy
Representative gene: GCF_003284655#DR013_RS10510
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 29 363 · GCF_003284655
AssemblyASM328465v1 · Scaffoldhaploid
Genome composition3 609 629 bp · 30,0% GCClostridium paraputrificum
Signal transduction countsGenes 69 · HK 35 · RR 31CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key