1 Response_reg#1
5-114 aa · 110 aa · 46.4% of protein
Raw token
Response_reg:5:1.81e-41:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B5P40_RS30560
Response regulator OmpR family
Bacillus sp. SRB_8 · GCF_003264205
ClassRRTypeOmpRLength237 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003264205#B5P40_RS30560Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 237 aa (78.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
154-229 aa · 76 aa · 32.1% of protein
Raw token
Trans_reg_C:154:8.27e-32:229:76:77- Raw architecture: Response_reg:5:1.81e-41:114:111:111#Trans_reg_C:154:8.27e-32:229:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003264205::NZ_NADT01000067.1::G00068
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8455-10244Genomic interval covered by the local TCS group.
Identifiers
Old locus tagB5P40_30315RefSeq proteinWP_002069741.1
Context group ID
GCF_003264205::NZ_NADT01000067.1::G00068Context members
B5P40_RS30555B5P40_RS30560
Partner locus tags
B5P40_RS30555B5P40_RS30560
Partner old locus tags
B5P40_30310B5P40_30315
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002069741.1Primary protein accession used for annex mappings.
UniProt accessionA0A242Z3D0Primary UniProt accession resolved in the annex database.
UniProt IDA0A242Z3D0_9BACIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB5P40_RS30560Primary locus identifier stored in the genes table.
Old locus tagB5P40_30315Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NADT01000067.1Sequence record reported by the local genomic context database.
Genomic interval9 531-10 244 nt714 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span8 455-10 244 ntGCF_003264205::NZ_NADT01000067.1::G00068
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003264205::NZ_NADT01000067.1::G00068Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NADT01000067.1All displayed genes belong to this local TCS context.
Neighborhood span8 455-10 244 nt1 790 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 455 nt10 244 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
B5P40_RS30555GCF_003264205#B5P40_RS30555
HKClassic
8 455-9 534 nt · Reverse (-)
B5P40_RS30560GCF_003264205#B5P40_RS30560
RROmpRCurrent focus
9 531-10 244 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000161335#BCERE0026_RS28335Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0961668
Simplified PFAM architecture for RROC_0961668
PFAM domain coverage: 185 / 237 aa (78.1%)
1 aa237 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[154-229]
- Domain count: 2
- Matched identifier: RROC_0961668
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 154-229 ; Trans_reg_C 154-229
Cluster members and taxonomy
Representative gene: GCF_000161335#BCERE0026_RS28335
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 969 377 · GCF_003264205
AssemblyASM326420v1 · Scaffoldhaploid
Genome composition6 134 098 bp · 35,0% GCBacillus sp. SRB_8
Signal transduction countsGenes 125 · HK 66 · RR 58CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key