1 Response_reg#1
4-117 aa · 114 aa · 46.3% of protein
Raw token
Response_reg:4:1.4e-19:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DDA44_RS06805
Response regulator, unclassified
Escherichia coli · GCF_003175975
ClassRRTypeunclassifiedLength246 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003175975#DDA44_RS06805Stable P2CS identifier used across views.
GenomeGCF_003175975Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length246 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage114 / 246 aa (46.3%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa246 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:1.4e-19:117:114:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003175975::NZ_BGLJ01000046.1::G00011
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span11222-11962Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_003175975::NZ_BGLJ01000046.1::G00011Context members
DDA44_RS06805
Partner locus tags
DDA44_RS06805
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_109929889.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDDA44_RS06805Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_BGLJ01000046.1Sequence record reported by the local genomic context database.
Genomic interval11 222-11 962 nt741 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span11 222-11 962 ntGCF_003175975::NZ_BGLJ01000046.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003175975::NZ_BGLJ01000046.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BGLJ01000046.1All displayed genes belong to this local TCS context.
Neighborhood span11 222-11 962 nt741 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
11 222 nt11 962 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DDA44_RS06805GCF_003175975#DDA44_RS06805
RRunclassifiedCurrent focus
11 222-11 962 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003175975#DDA44_RS06805The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0773961
Simplified PFAM architecture for RROC_0773961
PFAM domain coverage: 114 / 246 aa (46.3%)
1 aa246 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-117]
- Domain count: 1
- Matched identifier: RROC_0773961
- Positioned domains: Response_reg 4-117 ; Response_reg 4-117
Cluster members and taxonomy
Representative gene: GCF_003175975#DDA44_RS06805
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 562 · GCF_003175975
AssemblyASM317597v1 · Contighaploid
Genome composition4 656 800 bp · 51,0% GCEscherichia coli
Signal transduction countsGenes 62 · HK 29 · RR 32CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key