1 HAMP#1
267-335 aa · 69 aa · 10.4% of protein
Raw token
HAMP:267:0.00000000000000109:335:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CWE05_RS01920
Histidine kinase, Classic
Bifidobacterium longum · GCF_003130775
ClassHKTypeClassicLength663 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003130775#CWE05_RS01920Stable P2CS identifier used across views.
GenomeGCF_003130775Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length663 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage287 / 663 aa (43.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
347-416 aa · 70 aa · 10.6% of protein
Raw token
HisKA:347:1.23e-17:416:70:643 HATPase_c#3
480-627 aa · 148 aa · 22.3% of protein
Raw token
HATPase_c:480:4.97e-21:627:148:109- Raw architecture: HAMP:267:0.00000000000000109:335:69:69#HisKA:347:1.23e-17:416:70:64#HATPase_c:480:4.97e-21:627:148:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003130775::NZ_PHUM01000002.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span139479-142231Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCWE05_01920RefSeq proteinWP_181365453.1
Context group ID
GCF_003130775::NZ_PHUM01000002.1::G00005Context members
CWE05_RS01920CWE05_RS01925
Partner locus tags
CWE05_RS01920CWE05_RS01925
Partner old locus tags
CWE05_01920CWE05_01925
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_181365453.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCWE05_RS01920Primary locus identifier stored in the genes table.
Old locus tagCWE05_01920Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PHUM01000002.1Sequence record reported by the local genomic context database.
Genomic interval139 479-141 470 nt1 992 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span139 479-142 231 ntGCF_003130775::NZ_PHUM01000002.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003130775::NZ_PHUM01000002.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PHUM01000002.1All displayed genes belong to this local TCS context.
Neighborhood span139 479-142 231 nt2 753 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
139 479 nt142 231 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CWE05_RS01920GCF_003130775#CWE05_RS01920
HKClassicCurrent focus
139 479-141 470 nt · Reverse (-)
CWE05_RS01925GCF_003130775#CWE05_RS01925
RROmpR
141 500-142 231 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003130775#CWE05_RS01920The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0864848
Simplified PFAM architecture for HKOC_0864848
PFAM domain coverage: 268 / 663 aa (40.4%)
1 aa663 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[284-335] | HisKA[348-416] | HATPase_c[480-626]
- Domain count: 3
- Matched identifier: HKOC_0864848
- Positioned domains: HAMP 284-335 ; HisKA 348-416 ; HATPase_c 480-626
Cluster members and taxonomy
Representative gene: GCF_003130775#CWE05_RS01920
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_003130775
AssemblyASM313077v1 · Contighaploid
Genome composition2 392 556 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 25 · HK 11 · RR 13CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key