1 HisKA#1
418-481 aa · 64 aa · 9.9% of protein
Raw token
HisKA:418:0.000000000000424:481:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C7386_RS09635
Histidine kinase, Classic
Agathobaculum butyriciproducens · GCF_003096535
ClassHKTypeClassicLength644 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003096535#C7386_RS09635Stable P2CS identifier used across views.
GenomeGCF_003096535Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Agathobaculum
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length644 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 644 aa (26.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa644 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
529-633 aa · 105 aa · 16.3% of protein
Raw token
HATPase_c:529:5.19e-24:633:109:109- Raw architecture: HisKA:418:0.000000000000424:481:65:64#HATPase_c:529:5.19e-24:633:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003096535::NZ_QEKJ01000013.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span38258-40856Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC7386_11332RefSeq proteinWP_110436308.1
Context group ID
GCF_003096535::NZ_QEKJ01000013.1::G00026Context members
C7386_RS09635C7386_RS09640
Partner locus tags
C7386_RS09635C7386_RS09640
Partner old locus tags
C7386_11332C7386_11333
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_110436308.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC7386_RS09635Primary locus identifier stored in the genes table.
Old locus tagC7386_11332Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QEKJ01000013.1Sequence record reported by the local genomic context database.
Genomic interval38 258-40 192 nt1 935 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span38 258-40 856 ntGCF_003096535::NZ_QEKJ01000013.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003096535::NZ_QEKJ01000013.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QEKJ01000013.1All displayed genes belong to this local TCS context.
Neighborhood span38 258-40 856 nt2 599 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
38 258 nt40 856 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
C7386_RS09635GCF_003096535#C7386_RS09635
HKClassicCurrent focus
38 258-40 192 nt · Forward (+)
C7386_RS09640GCF_003096535#C7386_RS09640
RROmpR
40 182-40 856 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003096535#C7386_RS09635The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0911364
Simplified PFAM architecture for HKOC_0911364
PFAM domain coverage: 168 / 644 aa (26.1%)
1 aa644 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[418-483] | HATPase_c[531-632]
- Domain count: 2
- Matched identifier: HKOC_0911364
- Positioned domains: HisKA 418-483 ; HATPase_c 531-632
Cluster members and taxonomy
Representative gene: GCF_003096535#C7386_RS09635
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 628 085 · GCF_003096535
AssemblyASM309653v1 · Scaffoldhaploid
Genome composition2 809 383 bp · 54,0% GCAgathobaculum butyriciproducens
Signal transduction countsGenes 60 · HK 28 · RR 30CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusAgathobaculum
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Agathobaculum
Related genes
Preview from the same derived genome key