1 Response_reg#1
4-110 aa · 107 aa · 19.9% of protein
Raw token
Response_reg:4:5.74e-32:110:107:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C7386_RS07905
Response regulator, unclassified
Agathobaculum butyriciproducens · GCF_003096535
ClassRRTypeunclassifiedLength537 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003096535#C7386_RS07905Stable P2CS identifier used across views.
GenomeGCF_003096535Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Agathobaculum
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length537 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage185 / 537 aa (34.5%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa537 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
445-484 aa · 40 aa · 7.4% of protein
Raw token
HTH_AraC:445:0.000000000387:484:40:423 HTH_AraC#3
497-534 aa · 38 aa · 7.1% of protein
Raw token
HTH_AraC:497:0.00000437:534:38:42- Raw architecture: Response_reg:4:5.74e-32:110:107:111#HTH_AraC:445:0.000000000387:484:40:42#HTH_AraC:497:0.00000437:534:38:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003096535::NZ_QEKJ01000008.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span85433-88064Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC7386_10870RefSeq proteinWP_116705236.1
Context group ID
GCF_003096535::NZ_QEKJ01000008.1::G00024Context members
C7386_RS07905C7386_RS07910
Partner locus tags
C7386_RS07905C7386_RS07910
Partner old locus tags
C7386_10870C7386_10871
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_116705236.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC7386_RS07905Primary locus identifier stored in the genes table.
Old locus tagC7386_10870Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QEKJ01000008.1Sequence record reported by the local genomic context database.
Genomic interval85 433-87 046 nt1 614 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span85 433-88 064 ntGCF_003096535::NZ_QEKJ01000008.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003096535::NZ_QEKJ01000008.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QEKJ01000008.1All displayed genes belong to this local TCS context.
Neighborhood span85 433-88 064 nt2 632 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
85 433 nt88 064 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
C7386_RS07905GCF_003096535#C7386_RS07905
RRunclassifiedCurrent focus
85 433-87 046 nt · Forward (+)
C7386_RS07910GCF_003096535#C7386_RS07910
HKClassic
87 060-88 064 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003096535#C7386_RS07905The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0096646
Simplified PFAM architecture for RROC_0096646
PFAM domain coverage: 189 / 537 aa (35.2%)
1 aa537 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-114] | HTH_18[457-534]
- Domain count: 2
- Matched identifier: RROC_0096646
- Positioned domains: Response_reg 4-114 ; Response_reg 4-114 ; HTH_18 457-534 ; HTH_18 457-534
Cluster members and taxonomy
Representative gene: GCF_003096535#C7386_RS07905
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 628 085 · GCF_003096535
AssemblyASM309653v1 · Scaffoldhaploid
Genome composition2 809 383 bp · 54,0% GCAgathobaculum butyriciproducens
Signal transduction countsGenes 60 · HK 28 · RR 30CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusAgathobaculum
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Agathobaculum
Related genes
Preview from the same derived genome key