1 HAMP#1
182-252 aa · 71 aa · 14.0% of protein
Raw token
HAMP:182:0.00000000000295:252:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C7386_RS06005
Histidine kinase, Classic
Agathobaculum butyriciproducens · GCF_003096535
ClassHKTypeClassicLength508 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003096535#C7386_RS06005Stable P2CS identifier used across views.
GenomeGCF_003096535Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Agathobaculum
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length508 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 508 aa (48.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa508 aa
Domain-by-domain annotation3 items
2 HisKA#2
277-344 aa · 68 aa · 13.4% of protein
Raw token
HisKA:277:0.00000000000000516:344:68:643 HATPase_c#3
388-496 aa · 109 aa · 21.5% of protein
Raw token
HATPase_c:388:1.28e-25:496:110:109- Raw architecture: HAMP:182:0.00000000000295:252:71:69#HisKA:277:0.00000000000000516:344:68:64#HATPase_c:388:1.28e-25:496:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003096535::NZ_QEKJ01000005.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span72901-75104Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC7386_10560RefSeq proteinWP_110435723.1
Context group ID
GCF_003096535::NZ_QEKJ01000005.1::G00019Context members
C7386_RS06005C7386_RS06010
Partner locus tags
C7386_RS06005C7386_RS06010
Partner old locus tags
C7386_10560C7386_10561
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_110435723.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC7386_RS06005Primary locus identifier stored in the genes table.
Old locus tagC7386_10560Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QEKJ01000005.1Sequence record reported by the local genomic context database.
Genomic interval72 901-74 427 nt1 527 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span72 901-75 104 ntGCF_003096535::NZ_QEKJ01000005.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003096535::NZ_QEKJ01000005.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QEKJ01000005.1All displayed genes belong to this local TCS context.
Neighborhood span72 901-75 104 nt2 204 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
72 901 nt75 104 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
C7386_RS06005GCF_003096535#C7386_RS06005
HKClassicCurrent focus
72 901-74 427 nt · Reverse (-)
C7386_RS06010GCF_003096535#C7386_RS06010
RROmpR
74 424-75 104 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003096535#C7386_RS06005The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1437431
Simplified PFAM architecture for HKOC_1437431
PFAM domain coverage: 230 / 508 aa (45.3%)
1 aa508 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[199-252] | HisKA[277-343] | HATPase_c[389-497]
- Domain count: 3
- Matched identifier: HKOC_1437431
- Positioned domains: HAMP 199-252 ; HisKA 277-343 ; HATPase_c 389-497
Cluster members and taxonomy
Representative gene: GCF_003096535#C7386_RS06005
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 628 085 · GCF_003096535
AssemblyASM309653v1 · Scaffoldhaploid
Genome composition2 809 383 bp · 54,0% GCAgathobaculum butyriciproducens
Signal transduction countsGenes 60 · HK 28 · RR 30CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusAgathobaculum
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Agathobaculum
Related genes
Preview from the same derived genome key