1 dCache_1#1
175-280 aa · 106 aa · 10.8% of protein
Raw token
dCache_1:175:0.0000348:280:106:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C7386_RS05465
Histidine kinase, Hybrid
Agathobaculum butyriciproducens · GCF_003096535
ClassHKTypeHybridLength982 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003096535#C7386_RS05465Stable P2CS identifier used across views.
GenomeGCF_003096535Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Agathobaculum
Domain signature
Compact overview inferred from the domain field
dCache_1PAS_9HisKAHATPase_cResponse_reg
Protein length982 aaLength used to scale native and Biotite-like views.
Annotated domains66 with usable coordinates.
Domain coverage626 / 982 aa (63.7%)Merged over positioned domains only.
Domain description1 dCache_1,1 PAS_9,1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa982 aa
Domain-by-domain annotation6 items
2 PAS_9#2
347-450 aa · 104 aa · 10.6% of protein
Raw token
PAS_9:347:0.00000936:450:107:1023 HisKA#3
471-537 aa · 67 aa · 6.8% of protein
Raw token
HisKA:471:1.76e-17:537:67:644 HATPase_c#4
585-701 aa · 117 aa · 11.9% of protein
Raw token
HATPase_c:585:8.01e-33:701:117:1095 Response_reg#5
721-834 aa · 114 aa · 11.6% of protein
Raw token
Response_reg:721:1.39e-19:834:114:1116 Response_reg#6
861-978 aa · 118 aa · 12.0% of protein
Raw token
Response_reg:861:1.69e-31:978:118:111- Raw architecture: dCache_1:175:0.0000348:280:106:195#PAS_9:347:0.00000936:450:107:102#HisKA:471:1.76e-17:537:67:64#HATPase_c:585:8.01e-33:701:117:109#Response_reg:721:1.39e-19:834:114:111#Response_reg:861:1.69e-31:978:118:111
- Domain description: 1 dCache_1,1 PAS_9,1 HisKA,1 HATPase_c,2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003096535::NZ_QEKJ01000004.1::G00016
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span137496-140444Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC7386_104128RefSeq proteinWP_116704981.1
Context group ID
GCF_003096535::NZ_QEKJ01000004.1::G00016Context members
C7386_RS05465
Partner locus tags
C7386_RS05465
Partner old locus tags
C7386_104128
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_116704981.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC7386_RS05465Primary locus identifier stored in the genes table.
Old locus tagC7386_104128Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QEKJ01000004.1Sequence record reported by the local genomic context database.
Genomic interval137 496-140 444 nt2 949 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span137 496-140 444 ntGCF_003096535::NZ_QEKJ01000004.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003096535::NZ_QEKJ01000004.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QEKJ01000004.1All displayed genes belong to this local TCS context.
Neighborhood span137 496-140 444 nt2 949 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
137 496 nt140 444 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
C7386_RS05465GCF_003096535#C7386_RS05465
HKHybridCurrent focus
137 496-140 444 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003096535#C7386_RS05465The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0305016
Simplified PFAM architecture for HKOC_0305016
PFAM domain coverage: 414 / 982 aa (42.2%)
1 aa982 aa
HisKAHATPase_cResponse_regResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg + Response_reg
- Raw architecture: HisKA[471-537] | HATPase_c[585-701] | Response_reg[721-833] | Response_reg[861-977]
- Domain count: 4
- Matched identifier: HKOC_0305016
- Positioned domains: HisKA 471-537 ; HATPase_c 585-701 ; Response_reg 721-833 ; Response_reg 861-977
Cluster members and taxonomy
Representative gene: GCF_003096535#C7386_RS05465
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 628 085 · GCF_003096535
AssemblyASM309653v1 · Scaffoldhaploid
Genome composition2 809 383 bp · 54,0% GCAgathobaculum butyriciproducens
Signal transduction countsGenes 60 · HK 28 · RR 30CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusAgathobaculum
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Agathobaculum
Related genes
Preview from the same derived genome key