1 HAMP#1
191-257 aa · 67 aa · 13.7% of protein
Raw token
HAMP:191:0.00000000000126:257:67:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C7386_RS05425
Histidine kinase, Classic
Agathobaculum butyriciproducens · GCF_003096535
ClassHKTypeClassicLength490 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_003096535#C7386_RS05425Stable P2CS identifier used across views.
GenomeGCF_003096535Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Agathobaculum
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length490 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage242 / 490 aa (49.4%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa490 aa
Domain-by-domain annotation3 items
2 His_kinase#2
291-370 aa · 80 aa · 16.3% of protein
Raw token
His_kinase:291:5.21e-33:370:80:803 HATPase_c#3
390-484 aa · 95 aa · 19.4% of protein
Raw token
HATPase_c:390:0.0000000000241:484:104:109- Raw architecture: HAMP:191:0.00000000000126:257:67:69#His_kinase:291:5.21e-33:370:80:80#HATPase_c:390:0.0000000000241:484:104:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_003096535::NZ_QEKJ01000004.1::G00014
Group size33 locus tags listed below.
HK / RR2 / 1Counts resolved for the local TCS neighborhood.
Context span122800-127766Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC7386_104120RefSeq proteinWP_165815473.1
Context group ID
GCF_003096535::NZ_QEKJ01000004.1::G00014Context members
C7386_RS05420C7386_RS05425C7386_RS05430
Partner locus tags
C7386_RS05420C7386_RS05425C7386_RS05430
Partner old locus tags
C7386_104119C7386_104120C7386_104121
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_165815473.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC7386_RS05425Primary locus identifier stored in the genes table.
Old locus tagC7386_104120Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QEKJ01000004.1Sequence record reported by the local genomic context database.
Genomic interval123 519-124 991 nt1 473 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span122 800-127 766 ntGCF_003096535::NZ_QEKJ01000004.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003096535::NZ_QEKJ01000004.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QEKJ01000004.1All displayed genes belong to this local TCS context.
Neighborhood span122 800-127 766 nt4 967 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
122 800 nt127 766 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
C7386_RS05420GCF_003096535#C7386_RS05420
RRunclassified
122 800-123 525 nt · Reverse (-)
C7386_RS05425GCF_003096535#C7386_RS05425
HKClassicCurrent focus
123 519-124 991 nt · Reverse (-)
C7386_RS05430GCF_003096535#C7386_RS05430
HKHybrid
125 196-127 766 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003096535#C7386_RS05425The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1535317
Simplified PFAM architecture for HKOC_1535317
PFAM domain coverage: 225 / 490 aa (45.9%)
1 aa490 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[207-257] | His_kinase[292-370] | HATPase_c[390-484]
- Domain count: 3
- Matched identifier: HKOC_1535317
- Positioned domains: HAMP 207-257 ; His_kinase 292-370 ; HATPase_c 390-484
Cluster members and taxonomy
Representative gene: GCF_003096535#C7386_RS05425
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 628 085 · GCF_003096535
AssemblyASM309653v1 · Scaffoldhaploid
Genome composition2 809 383 bp · 54,0% GCAgathobaculum butyriciproducens
Signal transduction countsGenes 60 · HK 28 · RR 30CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusAgathobaculum
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Agathobaculum
Related genes
Preview from the same derived genome key