1 HisKA#1
341-407 aa · 67 aa · 9.3% of protein
Raw token
HisKA:341:0.00000000000000955:407:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C7386_RS04045
Histidine kinase, Hybrid
Agathobaculum butyriciproducens · GCF_003096535
ClassHKTypeHybridLength721 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003096535#C7386_RS04045Stable P2CS identifier used across views.
GenomeGCF_003096535Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Agathobaculum
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length721 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage304 / 721 aa (42.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa721 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
454-572 aa · 119 aa · 16.5% of protein
Raw token
HATPase_c:454:1.85e-28:572:119:1093 Response_reg#3
596-713 aa · 118 aa · 16.4% of protein
Raw token
Response_reg:596:5.66e-24:713:119:111- Raw architecture: HisKA:341:0.00000000000000955:407:67:64#HATPase_c:454:1.85e-28:572:119:109#Response_reg:596:5.66e-24:713:119:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003096535::NZ_QEKJ01000003.1::G00010
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span40191-42356Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC7386_10349RefSeq proteinWP_110436930.1
Context group ID
GCF_003096535::NZ_QEKJ01000003.1::G00010Context members
C7386_RS04045
Partner locus tags
C7386_RS04045
Partner old locus tags
C7386_10349
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_110436930.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC7386_RS04045Primary locus identifier stored in the genes table.
Old locus tagC7386_10349Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QEKJ01000003.1Sequence record reported by the local genomic context database.
Genomic interval40 191-42 356 nt2 166 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span40 191-42 356 ntGCF_003096535::NZ_QEKJ01000003.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003096535::NZ_QEKJ01000003.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QEKJ01000003.1All displayed genes belong to this local TCS context.
Neighborhood span40 191-42 356 nt2 166 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
40 191 nt42 356 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
C7386_RS04045GCF_003096535#C7386_RS04045
HKHybridCurrent focus
40 191-42 356 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003096535#C7386_RS04045The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0730833
Simplified PFAM architecture for HKOC_0730833
PFAM domain coverage: 301 / 721 aa (41.7%)
1 aa721 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[341-407] | HATPase_c[455-571] | Response_reg[596-712]
- Domain count: 3
- Matched identifier: HKOC_0730833
- Positioned domains: HisKA 341-407 ; HATPase_c 455-571 ; Response_reg 596-712
Cluster members and taxonomy
Representative gene: GCF_003096535#C7386_RS04045
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 628 085 · GCF_003096535
AssemblyASM309653v1 · Scaffoldhaploid
Genome composition2 809 383 bp · 54,0% GCAgathobaculum butyriciproducens
Signal transduction countsGenes 60 · HK 28 · RR 30CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusAgathobaculum
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Agathobaculum
Related genes
Preview from the same derived genome key