1 Response_reg#1
36-123 aa · 88 aa · 35.6% of protein
Raw token
Response_reg:36:0.000000000108:123:88:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C7386_RS03975
Response regulator Spo0A family
Agathobaculum butyriciproducens · GCF_003096535
ClassRRTypeSpo0ALength247 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003096535#C7386_RS03975Stable P2CS identifier used across views.
GenomeGCF_003096535Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Agathobaculum
Domain signature
Compact overview inferred from the domain field
Response_regSpo0A_C
Protein length247 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 247 aa (76.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Spo0A_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa247 aa
Domain-by-domain annotation2 items
2 Spo0A_C#2
141-240 aa · 100 aa · 40.5% of protein
Raw token
Spo0A_C:141:8e-26:240:102:104- Raw architecture: Response_reg:36:0.000000000108:123:88:111#Spo0A_C:141:8e-26:240:102:104
- Domain description: 1 Response_reg,1 Spo0A_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003096535::NZ_QEKJ01000003.1::G00009
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span30437-31180Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC7386_10336RefSeq proteinWP_116704891.1
Context group ID
GCF_003096535::NZ_QEKJ01000003.1::G00009Context members
C7386_RS03975
Partner locus tags
C7386_RS03975
Partner old locus tags
C7386_10336
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_116704891.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC7386_RS03975Primary locus identifier stored in the genes table.
Old locus tagC7386_10336Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QEKJ01000003.1Sequence record reported by the local genomic context database.
Genomic interval30 437-31 180 nt744 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span30 437-31 180 ntGCF_003096535::NZ_QEKJ01000003.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003096535::NZ_QEKJ01000003.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QEKJ01000003.1All displayed genes belong to this local TCS context.
Neighborhood span30 437-31 180 nt744 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
30 437 nt31 180 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
C7386_RS03975GCF_003096535#C7386_RS03975
RRSpo0ACurrent focus
30 437-31 180 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003096535#C7386_RS03975The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Spo0A_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0759203
Simplified PFAM architecture for RROC_0759203
PFAM domain coverage: 208 / 247 aa (84.2%)
1 aa247 aa
Response_regSpo0A_C
- Simplified architecture: Response_reg + Spo0A_C
- Raw architecture: Response_reg[16-123] | Spo0A_C[140-239]
- Domain count: 2
- Matched identifier: RROC_0759203
- Positioned domains: Response_reg 16-123 ; Response_reg 16-123 ; Spo0A_C 140-239 ; Spo0A_C 140-239
Cluster members and taxonomy
Representative gene: GCF_003096535#C7386_RS03975
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 628 085 · GCF_003096535
AssemblyASM309653v1 · Scaffoldhaploid
Genome composition2 809 383 bp · 54,0% GCAgathobaculum butyriciproducens
Signal transduction countsGenes 60 · HK 28 · RR 30CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusAgathobaculum
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Agathobaculum
Related genes
Preview from the same derived genome key