1 sCache_like#1
36-136 aa · 101 aa · 18.4% of protein
Raw token
sCache_like:36:0.0000000429:136:113:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C7386_RS02050
Histidine kinase, Classic
Agathobaculum butyriciproducens · GCF_003096535
ClassHKTypeClassicLength549 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003096535#C7386_RS02050Stable P2CS identifier used across views.
GenomeGCF_003096535Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Agathobaculum
Domain signature
Compact overview inferred from the domain field
sCache_likePAS_9HisKAHATPase_c
Protein length549 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage371 / 549 aa (67.6%)Merged over positioned domains only.
Domain description1 sCache_like,1 PAS_9,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa549 aa
Domain-by-domain annotation4 items
2 PAS_9#2
231-321 aa · 91 aa · 16.6% of protein
Raw token
PAS_9:231:0.0000568:321:103:1023 HisKA#3
328-394 aa · 67 aa · 12.2% of protein
Raw token
HisKA:328:4.28e-18:394:67:644 HATPase_c#4
438-549 aa · 112 aa · 20.4% of protein
Raw token
HATPase_c:438:7.43e-27:549:112:109- Raw architecture: sCache_like:36:0.0000000429:136:113:114#PAS_9:231:0.0000568:321:103:102#HisKA:328:4.28e-18:394:67:64#HATPase_c:438:7.43e-27:549:112:109
- Domain description: 1 sCache_like,1 PAS_9,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003096535::NZ_QEKJ01000001.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span435474-437803Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC7386_101413RefSeq proteinWP_116704732.1
Context group ID
GCF_003096535::NZ_QEKJ01000001.1::G00006Context members
C7386_RS02050C7386_RS02055
Partner locus tags
C7386_RS02050C7386_RS02055
Partner old locus tags
C7386_101413C7386_101414
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_116704732.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC7386_RS02050Primary locus identifier stored in the genes table.
Old locus tagC7386_101413Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QEKJ01000001.1Sequence record reported by the local genomic context database.
Genomic interval435 474-437 123 nt1 650 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span435 474-437 803 ntGCF_003096535::NZ_QEKJ01000001.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003096535::NZ_QEKJ01000001.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QEKJ01000001.1All displayed genes belong to this local TCS context.
Neighborhood span435 474-437 803 nt2 330 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
435 474 nt437 803 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
C7386_RS02050GCF_003096535#C7386_RS02050
HKClassicCurrent focus
435 474-437 123 nt · Reverse (-)
C7386_RS02055GCF_003096535#C7386_RS02055
RROmpR
437 120-437 803 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003096535#C7386_RS02050The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1296037
Simplified PFAM architecture for HKOC_1296037
PFAM domain coverage: 177 / 549 aa (32.2%)
1 aa549 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[328-394] | HATPase_c[439-548]
- Domain count: 2
- Matched identifier: HKOC_1296037
- Positioned domains: HisKA 328-394 ; HATPase_c 439-548
Cluster members and taxonomy
Representative gene: GCF_003096535#C7386_RS02050
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 628 085 · GCF_003096535
AssemblyASM309653v1 · Scaffoldhaploid
Genome composition2 809 383 bp · 54,0% GCAgathobaculum butyriciproducens
Signal transduction countsGenes 60 · HK 28 · RR 30CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusAgathobaculum
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Agathobaculum
Related genes
Preview from the same derived genome key