1 Response_reg#1
7-111 aa · 105 aa · 13.2% of protein
Raw token
Response_reg:7:1.07e-27:111:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C7386_RS00360
Response regulator, RpfG family
Agathobaculum butyriciproducens · GCF_003096535
ClassRRTypeRpfGLength793 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003096535#C7386_RS00360Stable P2CS identifier used across views.
GenomeGCF_003096535Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Agathobaculum
Domain signature
Compact overview inferred from the domain field
Response_regHDGGDEF
Protein length793 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage355 / 793 aa (44.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HD,1 GGDEFSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa793 aa
Domain-by-domain annotation3 items
2 HD#2
194-299 aa · 106 aa · 13.4% of protein
Raw token
HD:194:0.00000000000000436:299:106:1103 GGDEF#3
646-789 aa · 144 aa · 18.2% of protein
Raw token
GGDEF:646:6.75e-36:789:158:160- Raw architecture: Response_reg:7:1.07e-27:111:106:111#HD:194:0.00000000000000436:299:106:110#GGDEF:646:6.75e-36:789:158:160
- Domain description: 1 Response_reg,1 HD,1 GGDEF
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003096535::NZ_QEKJ01000001.1::G00002
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span71980-74361Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC7386_10173RefSeq proteinWP_318261156.1
Context group ID
GCF_003096535::NZ_QEKJ01000001.1::G00002Context members
C7386_RS00360
Partner locus tags
C7386_RS00360
Partner old locus tags
C7386_10173
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_318261156.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC7386_RS00360Primary locus identifier stored in the genes table.
Old locus tagC7386_10173Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QEKJ01000001.1Sequence record reported by the local genomic context database.
Genomic interval71 980-74 361 nt2 382 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span71 980-74 361 ntGCF_003096535::NZ_QEKJ01000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003096535::NZ_QEKJ01000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QEKJ01000001.1All displayed genes belong to this local TCS context.
Neighborhood span71 980-74 361 nt2 382 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
71 980 nt74 361 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
C7386_RS00360GCF_003096535#C7386_RS00360
RRRpfGCurrent focus
71 980-74 361 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003096535#C7386_RS00360The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HD_5 + GGDEF3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0016340
Simplified PFAM architecture for RROC_0016340
PFAM domain coverage: 382 / 793 aa (48.2%)
1 aa793 aa
Response_regHD_5GGDEF
- Simplified architecture: Response_reg + HD_5 + GGDEF
- Raw architecture: Response_reg[7-115] | HD_5[191-320] | GGDEF[646-788]
- Domain count: 3
- Matched identifier: RROC_0016340
- Positioned domains: Response_reg 7-115 ; Response_reg 7-115 ; HD_5 191-320 ; HD_5 191-320 ; GGDEF 646-788 ; GGDEF 646-788
Cluster members and taxonomy
Representative gene: GCF_003096535#C7386_RS00360
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 628 085 · GCF_003096535
AssemblyASM309653v1 · Scaffoldhaploid
Genome composition2 809 383 bp · 54,0% GCAgathobaculum butyriciproducens
Signal transduction countsGenes 60 · HK 28 · RR 30CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusAgathobaculum
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Agathobaculum
Related genes
Preview from the same derived genome key