1 Response_reg#1
3-106 aa · 104 aa · 66.7% of protein
Raw token
Response_reg:3:1.11e-24:106:104:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DD705_RS02815
Response regulator, CheY family
Bifidobacterium longum · GCF_003094955
ClassRRTypeCheYLength156 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003094955#DD705_RS02815Stable P2CS identifier used across views.
GenomeGCF_003094955Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length156 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage104 / 156 aa (66.7%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:3:1.11e-24:106:104:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003094955::NZ_QDIW01000015.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4158-5976Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDD705_02815RefSeq proteinWP_241959545.1
Context group ID
GCF_003094955::NZ_QDIW01000015.1::G00003Context members
DD705_RS02810DD705_RS02815
Partner locus tags
DD705_RS02810DD705_RS02815
Partner old locus tags
DD705_02810DD705_02815
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_241959545.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDD705_RS02815Primary locus identifier stored in the genes table.
Old locus tagDD705_02815Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QDIW01000015.1Sequence record reported by the local genomic context database.
Genomic interval5 510-5 976 nt467 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span4 158-5 976 ntGCF_003094955::NZ_QDIW01000015.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003094955::NZ_QDIW01000015.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QDIW01000015.1All displayed genes belong to this local TCS context.
Neighborhood span4 158-5 976 nt1 819 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 158 nt5 976 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DD705_RS02810GCF_003094955#DD705_RS02810
HKClassic
4 158-5 510 nt · Forward (+)
DD705_RS02815GCF_003094955#DD705_RS02815
RRCheYCurrent focus
5 510-5 976 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003094955#DD705_RS02815The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2214295
Simplified PFAM architecture for RROC_2214295
PFAM domain coverage: 105 / 156 aa (67.3%)
1 aa156 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[3-107]
- Domain count: 1
- Matched identifier: RROC_2214295
- Positioned domains: Response_reg 3-107 ; Response_reg 3-107
Cluster members and taxonomy
Representative gene: GCF_003094955#DD705_RS02815
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_003094955
AssemblyASM309495v1 · Contighaploid
Genome composition2 417 279 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 23 · HK 10 · RR 11CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key