1 Response_reg#1
4-112 aa · 109 aa · 97.3% of protein
Raw token
Response_reg:4:1.03e-33:112:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C6557_RS30210
Response regulator, CheY family
Bacillus wiedmannii · GCF_003030885
ClassRRTypeCheYLength112 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003030885#C6557_RS30210Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length112 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage109 / 112 aa (97.3%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa112 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:1.03e-33:112:109:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003030885::NZ_PYWP01000043.1::G00045
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span718-1054Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC6557_30245RefSeq proteinWP_142402300.1
Context group ID
GCF_003030885::NZ_PYWP01000043.1::G00045Context members
C6557_RS30210
Partner locus tags
C6557_RS30210
Partner old locus tags
C6557_30245
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_142402300.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC6557_RS30210Primary locus identifier stored in the genes table.
Old locus tagC6557_30245Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PYWP01000043.1Sequence record reported by the local genomic context database.
Genomic interval718-1 054 nt337 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span718-1 054 ntGCF_003030885::NZ_PYWP01000043.1::G00045
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003030885::NZ_PYWP01000043.1::G00045Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PYWP01000043.1All displayed genes belong to this local TCS context.
Neighborhood span718-1 054 nt337 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
718 nt1 054 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
C6557_RS30210GCF_003030885#C6557_RS30210
RRCheYCurrent focus
718-1 054 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS15070Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1528475
Simplified PFAM architecture for RROC_1528475
PFAM domain coverage: 183 / 224 aa (81.7%)
1 aa224 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[148-220]
- Domain count: 2
- Matched identifier: RROC_1528475
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 148-220 ; Trans_reg_C 148-220
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS15070
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_003030885
AssemblyASM303088v1 · Scaffoldhaploid
Genome composition5 544 000 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 119 · HK 64 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key