1 HisKA#1
356-414 aa · 59 aa · 10.2% of protein
Raw token
HisKA:356:0.0000000022:414:59:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C6557_RS01960
Histidine kinase, Classic
Bacillus wiedmannii · GCF_003030885
ClassHKTypeClassicLength580 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003030885#C6557_RS01960Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length580 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 580 aa (28.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa580 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
471-578 aa · 108 aa · 18.6% of protein
Raw token
HATPase_c:471:4.39e-30:578:108:109- Raw architecture: HisKA:356:0.0000000022:414:59:64#HATPase_c:471:4.39e-30:578:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003030885::NZ_PYWP01000001.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span328482-330938Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC6557_01965RefSeq proteinWP_048545260.1
Context group ID
GCF_003030885::NZ_PYWP01000001.1::G00016Context members
C6557_RS01960C6557_RS01965
Partner locus tags
C6557_RS01960C6557_RS01965
Partner old locus tags
C6557_01965C6557_01970
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_048545260.1Primary protein accession used for annex mappings.
UniProt accessionA0A2C4MPJ4Primary UniProt accession resolved in the annex database.
UniProt IDA0A2C4MPJ4_9BACIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC6557_RS01960Primary locus identifier stored in the genes table.
Old locus tagC6557_01965Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PYWP01000001.1Sequence record reported by the local genomic context database.
Genomic interval328 482-330 224 nt1 743 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span328 482-330 938 ntGCF_003030885::NZ_PYWP01000001.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003030885::NZ_PYWP01000001.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PYWP01000001.1All displayed genes belong to this local TCS context.
Neighborhood span328 482-330 938 nt2 457 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
328 482 nt330 938 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
C6557_RS01960GCF_003030885#C6557_RS01960
HKClassicCurrent focus
328 482-330 224 nt · Reverse (-)
C6557_RS01965GCF_003030885#C6557_RS01965
RROmpR
330 234-330 938 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001044745#TU65_RS18570Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1162253
Simplified PFAM architecture for HKOC_1162253
PFAM domain coverage: 167 / 580 aa (28.8%)
1 aa580 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[356-414] | HATPase_c[471-578]
- Domain count: 2
- Matched identifier: HKOC_1162253
- Positioned domains: HisKA 356-414 ; HATPase_c 471-578
Cluster members and taxonomy
Representative gene: GCF_001044745#TU65_RS18570
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_003030885
AssemblyASM303088v1 · Scaffoldhaploid
Genome composition5 544 000 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 119 · HK 64 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key