1 HAMP#1
154-224 aa · 71 aa · 15.8% of protein
Raw token
HAMP:154:0.0000000000223:224:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C7U56_RS10270
Histidine kinase, Classic
Clostridium fessum · GCF_003024715
ClassHKTypeClassicLength450 aaTM0ValidatedNoCompleteYesContexttetrad
Gene IDGCF_003024715#C7U56_RS10270Stable P2CS identifier used across views.
GenomeGCF_003024715Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length450 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 450 aa (54.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa450 aa
Domain-by-domain annotation3 items
2 HisKA#2
231-294 aa · 64 aa · 14.2% of protein
Raw token
HisKA:231:0.0000000000000123:294:64:643 HATPase_c#3
339-448 aa · 110 aa · 24.4% of protein
Raw token
HATPase_c:339:3.52e-32:448:110:109- Raw architecture: HAMP:154:0.0000000000223:224:71:69#HisKA:231:0.0000000000000123:294:64:64#HATPase_c:339:3.52e-32:448:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltetradGCF_003024715::NZ_PYLO01000003.1::G00025
Group size44 locus tags listed below.
HK / RR2 / 2Counts resolved for the local TCS neighborhood.
Context span220711-225155Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC7U56_10260RefSeq proteinWP_107001139.1
Context group ID
GCF_003024715::NZ_PYLO01000003.1::G00025Context members
C7U56_RS10260C7U56_RS10265C7U56_RS10270C7U56_RS10275
Partner locus tags
C7U56_RS10260C7U56_RS10265C7U56_RS10270C7U56_RS10275
Partner old locus tags
C7U56_10250C7U56_10255C7U56_10260C7U56_10265
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_107001139.1Primary protein accession used for annex mappings.
UniProt accessionA0A2T3FNP8Primary UniProt accession resolved in the annex database.
UniProt IDA0A2T3FNP8_9CLOTDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC7U56_RS10270Primary locus identifier stored in the genes table.
Old locus tagC7U56_10260Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PYLO01000003.1Sequence record reported by the local genomic context database.
Genomic interval223 132-224 484 nt1 353 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span220 711-225 155 ntGCF_003024715::NZ_PYLO01000003.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003024715::NZ_PYLO01000003.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltetradNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PYLO01000003.1All displayed genes belong to this local TCS context.
Neighborhood span220 711-225 155 nt4 445 nt
Members41 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
220 711 nt225 155 nt
Neighborhood gene cards
4 genes in the current local neighborhood.
C7U56_RS10260GCF_003024715#C7U56_RS10260
HKClassic
220 711-221 976 nt · Reverse (-)
C7U56_RS10265GCF_003024715#C7U56_RS10265
RROmpR
221 952-222 641 nt · Reverse (-)
C7U56_RS10270GCF_003024715#C7U56_RS10270
HKClassicCurrent focus
223 132-224 484 nt · Reverse (-)
C7U56_RS10275GCF_003024715#C7U56_RS10275
RROmpR
224 481-225 155 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003024715#C7U56_RS10270The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1964516
Simplified PFAM architecture for HKOC_1964516
PFAM domain coverage: 230 / 450 aa (51.1%)
1 aa450 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[171-224] | HisKA[230-294] | HATPase_c[339-449]
- Domain count: 3
- Matched identifier: HKOC_1964516
- Positioned domains: HAMP 171-224 ; HisKA 230-294 ; HATPase_c 339-449
Cluster members and taxonomy
Representative gene: GCF_003024715#C7U56_RS10270
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 126 740 · GCF_003024715
AssemblyASM302471v1 · Contighaploid
Genome composition3 277 016 bp · 48,5% GCClostridium fessum
Signal transduction countsGenes 61 · HK 32 · RR 27CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key