1 HisKA#1
325-391 aa · 67 aa · 9.4% of protein
Raw token
HisKA:325:2.95e-17:391:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C7U56_RS10185
Histidine kinase, Hybrid
Clostridium fessum · GCF_003024715
ClassHKTypeHybridLength714 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003024715#C7U56_RS10185Stable P2CS identifier used across views.
GenomeGCF_003024715Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length714 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage303 / 714 aa (42.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa714 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
438-556 aa · 119 aa · 16.7% of protein
Raw token
HATPase_c:438:2.15e-29:556:119:1093 Response_reg#3
584-700 aa · 117 aa · 16.4% of protein
Raw token
Response_reg:584:5.89e-27:700:117:111- Raw architecture: HisKA:325:2.95e-17:391:67:64#HATPase_c:438:2.15e-29:556:119:109#Response_reg:584:5.89e-27:700:117:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003024715::NZ_PYLO01000003.1::G00023
Group size22 locus tags listed below.
HK / RR2 / 0Counts resolved for the local TCS neighborhood.
Context span203771-208813Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC7U56_10170RefSeq proteinWP_107001125.1
Context group ID
GCF_003024715::NZ_PYLO01000003.1::G00023Context members
C7U56_RS10180C7U56_RS10185
Partner locus tags
C7U56_RS10180C7U56_RS10185
Partner old locus tags
C7U56_10165C7U56_10170
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_107001125.1Primary protein accession used for annex mappings.
UniProt accessionA0A2T3FNS9Primary UniProt accession resolved in the annex database.
UniProt IDA0A2T3FNS9_9CLOTDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC7U56_RS10185Primary locus identifier stored in the genes table.
Old locus tagC7U56_10170Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PYLO01000003.1Sequence record reported by the local genomic context database.
Genomic interval206 669-208 813 nt2 145 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span203 771-208 813 ntGCF_003024715::NZ_PYLO01000003.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003024715::NZ_PYLO01000003.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PYLO01000003.1All displayed genes belong to this local TCS context.
Neighborhood span203 771-208 813 nt5 043 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
203 771 nt208 813 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
C7U56_RS10180GCF_003024715#C7U56_RS10180
HKHybrid
203 771-206 599 nt · Reverse (-)
C7U56_RS10185GCF_003024715#C7U56_RS10185
HKHybridCurrent focus
206 669-208 813 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003024715#C7U56_RS10185The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0744158
Simplified PFAM architecture for HKOC_0744158
PFAM domain coverage: 300 / 714 aa (42.0%)
1 aa714 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[325-391] | HATPase_c[439-555] | Response_reg[584-699]
- Domain count: 3
- Matched identifier: HKOC_0744158
- Positioned domains: HisKA 325-391 ; HATPase_c 439-555 ; Response_reg 584-699
Cluster members and taxonomy
Representative gene: GCF_003024715#C7U56_RS10185
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 126 740 · GCF_003024715
AssemblyASM302471v1 · Contighaploid
Genome composition3 277 016 bp · 48,5% GCClostridium fessum
Signal transduction countsGenes 61 · HK 32 · RR 27CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key