1 HisKA#1
425-489 aa · 65 aa · 10.0% of protein
Raw token
HisKA:425:0.00000000000526:489:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C7U56_RS08380
Histidine kinase, Classic
Clostridium fessum · GCF_003024715
ClassHKTypeClassicLength653 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003024715#C7U56_RS08380Stable P2CS identifier used across views.
GenomeGCF_003024715Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length653 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage178 / 653 aa (27.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa653 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
536-648 aa · 113 aa · 17.3% of protein
Raw token
HATPase_c:536:9.34e-28:648:113:109- Raw architecture: HisKA:425:0.00000000000526:489:65:64#HATPase_c:536:9.34e-28:648:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003024715::NZ_PYLO01000002.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span704849-707504Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC7U56_08365RefSeq proteinWP_107000892.1
Context group ID
GCF_003024715::NZ_PYLO01000002.1::G00017Context members
C7U56_RS08380C7U56_RS08385
Partner locus tags
C7U56_RS08380C7U56_RS08385
Partner old locus tags
C7U56_08365C7U56_08370
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_107000892.1Primary protein accession used for annex mappings.
UniProt accessionA0A2T3FRF6Primary UniProt accession resolved in the annex database.
UniProt IDA0A2T3FRF6_9CLOTDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC7U56_RS08380Primary locus identifier stored in the genes table.
Old locus tagC7U56_08365Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PYLO01000002.1Sequence record reported by the local genomic context database.
Genomic interval704 849-706 810 nt1 962 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span704 849-707 504 ntGCF_003024715::NZ_PYLO01000002.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003024715::NZ_PYLO01000002.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PYLO01000002.1All displayed genes belong to this local TCS context.
Neighborhood span704 849-707 504 nt2 656 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
704 849 nt707 504 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
C7U56_RS08380GCF_003024715#C7U56_RS08380
HKClassicCurrent focus
704 849-706 810 nt · Forward (+)
C7U56_RS08385GCF_003024715#C7U56_RS08385
RROmpR
706 803-707 504 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003024715#C7U56_RS08380The current gene is the representative for this cluster.
PFAM architectureUsp + DUF4118 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0890092
Simplified PFAM architecture for HKOC_0890092
PFAM domain coverage: 382 / 653 aa (58.5%)
1 aa653 aa
UspDUF4118HisKAHATPase_c
- Simplified architecture: Usp + DUF4118 + HisKA + HATPase_c
- Raw architecture: Usp[4-102] | DUF4118[155-261] | HisKA[425-489] | HATPase_c[537-647]
- Domain count: 4
- Matched identifier: HKOC_0890092
- Positioned domains: Usp 4-102 ; DUF4118 155-261 ; HisKA 425-489 ; HATPase_c 537-647
Cluster members and taxonomy
Representative gene: GCF_003024715#C7U56_RS08380
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 126 740 · GCF_003024715
AssemblyASM302471v1 · Contighaploid
Genome composition3 277 016 bp · 48,5% GCClostridium fessum
Signal transduction countsGenes 61 · HK 32 · RR 27CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key