1 HAMP#1
144-215 aa · 72 aa · 16.4% of protein
Raw token
HAMP:144:0.00000000505:215:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C7U56_RS07465
Histidine kinase, Classic
Clostridium fessum · GCF_003024715
ClassHKTypeClassicLength438 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003024715#C7U56_RS07465Stable P2CS identifier used across views.
GenomeGCF_003024715Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length438 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage242 / 438 aa (55.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa438 aa
Domain-by-domain annotation3 items
2 HisKA#2
225-289 aa · 65 aa · 14.8% of protein
Raw token
HisKA:225:0.000000000685:289:65:643 HATPase_c#3
330-434 aa · 105 aa · 24.0% of protein
Raw token
HATPase_c:330:1.42e-25:434:108:109- Raw architecture: HAMP:144:0.00000000505:215:72:69#HisKA:225:0.000000000685:289:65:64#HATPase_c:330:1.42e-25:434:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003024715::NZ_PYLO01000002.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span513991-516747Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC7U56_07450RefSeq proteinWP_107000772.1
Context group ID
GCF_003024715::NZ_PYLO01000002.1::G00012Context members
C7U56_RS07460C7U56_RS07465
Partner locus tags
C7U56_RS07460C7U56_RS07465
Partner old locus tags
C7U56_07445C7U56_07450
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_107000772.1Primary protein accession used for annex mappings.
UniProt accessionA0A2T3FR23Primary UniProt accession resolved in the annex database.
UniProt IDA0A2T3FR23_9CLOTDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC7U56_RS07465Primary locus identifier stored in the genes table.
Old locus tagC7U56_07450Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PYLO01000002.1Sequence record reported by the local genomic context database.
Genomic interval515 431-516 747 nt1 317 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span513 991-516 747 ntGCF_003024715::NZ_PYLO01000002.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003024715::NZ_PYLO01000002.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PYLO01000002.1All displayed genes belong to this local TCS context.
Neighborhood span513 991-516 747 nt2 757 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
513 991 nt516 747 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
C7U56_RS07460GCF_003024715#C7U56_RS07460
RRNtrC
513 991-515 355 nt · Reverse (-)
C7U56_RS07465GCF_003024715#C7U56_RS07465
HKClassicCurrent focus
515 431-516 747 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003024715#C7U56_RS07465The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2094594
Simplified PFAM architecture for HKOC_2094594
PFAM domain coverage: 217 / 438 aa (49.5%)
1 aa438 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[161-214] | HisKA[225-283] | HATPase_c[331-434]
- Domain count: 3
- Matched identifier: HKOC_2094594
- Positioned domains: HAMP 161-214 ; HisKA 225-283 ; HATPase_c 331-434
Cluster members and taxonomy
Representative gene: GCF_003024715#C7U56_RS07465
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 126 740 · GCF_003024715
AssemblyASM302471v1 · Contighaploid
Genome composition3 277 016 bp · 48,5% GCClostridium fessum
Signal transduction countsGenes 61 · HK 32 · RR 27CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key