1 Response_reg#1
5-114 aa · 110 aa · 44.2% of protein
Raw token
Response_reg:5:0.00000000000266:114:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C7U56_RS06420
Response regulator LytTR family
Clostridium fessum · GCF_003024715
ClassRRTypeLytTRLength249 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003024715#C7U56_RS06420Stable P2CS identifier used across views.
GenomeGCF_003024715Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length249 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage200 / 249 aa (80.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa249 aa
Domain-by-domain annotation2 items
2 LytTR#2
146-235 aa · 90 aa · 36.1% of protein
Raw token
LytTR:146:0.00000000000000377:235:94:98- Raw architecture: Response_reg:5:0.00000000000266:114:113:111#LytTR:146:0.00000000000000377:235:94:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003024715::NZ_PYLO01000002.1::G00010
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span309446-310195Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC7U56_06405RefSeq proteinWP_107000647.1
Context group ID
GCF_003024715::NZ_PYLO01000002.1::G00010Context members
C7U56_RS06420
Partner locus tags
C7U56_RS06420
Partner old locus tags
C7U56_06405
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_107000647.1Primary protein accession used for annex mappings.
UniProt accessionA0A2T3FQG4Primary UniProt accession resolved in the annex database.
UniProt IDA0A2T3FQG4_9CLOTDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC7U56_RS06420Primary locus identifier stored in the genes table.
Old locus tagC7U56_06405Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PYLO01000002.1Sequence record reported by the local genomic context database.
Genomic interval309 446-310 195 nt750 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span309 446-310 195 ntGCF_003024715::NZ_PYLO01000002.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003024715::NZ_PYLO01000002.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PYLO01000002.1All displayed genes belong to this local TCS context.
Neighborhood span309 446-310 195 nt750 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
309 446 nt310 195 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
C7U56_RS06420GCF_003024715#C7U56_RS06420
RRLytTRCurrent focus
309 446-310 195 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003024715#C7U56_RS06420The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0734173
Simplified PFAM architecture for RROC_0734173
PFAM domain coverage: 193 / 249 aa (77.5%)
1 aa249 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[12-114] | LytTR[146-235]
- Domain count: 2
- Matched identifier: RROC_0734173
- Positioned domains: Response_reg 12-114 ; Response_reg 12-114 ; LytTR 146-235 ; LytTR 146-235
Cluster members and taxonomy
Representative gene: GCF_003024715#C7U56_RS06420
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 126 740 · GCF_003024715
AssemblyASM302471v1 · Contighaploid
Genome composition3 277 016 bp · 48,5% GCClostridium fessum
Signal transduction countsGenes 61 · HK 32 · RR 27CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key