1 HAMP#1
235-303 aa · 69 aa · 13.0% of protein
Raw token
HAMP:235:0.00000000000000152:303:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C7U56_RS06040
Histidine kinase, Classic
Clostridium fessum · GCF_003024715
ClassHKTypeClassicLength529 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003024715#C7U56_RS06040Stable P2CS identifier used across views.
GenomeGCF_003024715Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length529 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage260 / 529 aa (49.1%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa529 aa
Domain-by-domain annotation3 items
2 His_kinase#2
318-397 aa · 80 aa · 15.1% of protein
Raw token
His_kinase:318:2.87e-31:397:80:803 HATPase_c#3
413-523 aa · 111 aa · 21.0% of protein
Raw token
HATPase_c:413:0.000000000000368:523:111:109- Raw architecture: HAMP:235:0.00000000000000152:303:69:69#His_kinase:318:2.87e-31:397:80:80#HATPase_c:413:0.000000000000368:523:111:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003024715::NZ_PYLO01000002.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span216619-219363Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC7U56_06025RefSeq proteinWP_107000594.1
Context group ID
GCF_003024715::NZ_PYLO01000002.1::G00008Context members
C7U56_RS06040C7U56_RS06045
Partner locus tags
C7U56_RS06040C7U56_RS06045
Partner old locus tags
C7U56_06025C7U56_06030
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_107000594.1Primary protein accession used for annex mappings.
UniProt accessionA0A2T3FQA0Primary UniProt accession resolved in the annex database.
UniProt IDA0A2T3FQA0_9CLOTDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC7U56_RS06040Primary locus identifier stored in the genes table.
Old locus tagC7U56_06025Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PYLO01000002.1Sequence record reported by the local genomic context database.
Genomic interval216 619-218 208 nt1 590 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span216 619-219 363 ntGCF_003024715::NZ_PYLO01000002.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003024715::NZ_PYLO01000002.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PYLO01000002.1All displayed genes belong to this local TCS context.
Neighborhood span216 619-219 363 nt2 745 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
216 619 nt219 363 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
C7U56_RS06040GCF_003024715#C7U56_RS06040
HKClassicCurrent focus
216 619-218 208 nt · Reverse (-)
C7U56_RS06045GCF_003024715#C7U56_RS06045
RRunclassified
218 248-219 363 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003024715#C7U56_RS06040The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1360410
Simplified PFAM architecture for HKOC_1360410
PFAM domain coverage: 239 / 529 aa (45.2%)
1 aa529 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[252-302] | His_kinase[319-395] | HATPase_c[413-523]
- Domain count: 3
- Matched identifier: HKOC_1360410
- Positioned domains: HAMP 252-302 ; His_kinase 319-395 ; HATPase_c 413-523
Cluster members and taxonomy
Representative gene: GCF_003024715#C7U56_RS06040
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 126 740 · GCF_003024715
AssemblyASM302471v1 · Contighaploid
Genome composition3 277 016 bp · 48,5% GCClostridium fessum
Signal transduction countsGenes 61 · HK 32 · RR 27CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key