1 HisKA#1
242-307 aa · 66 aa · 14.2% of protein
Raw token
HisKA:242:3.39e-18:307:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C7U56_RS02290
Histidine kinase, Classic
Clostridium fessum · GCF_003024715
ClassHKTypeClassicLength466 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003024715#C7U56_RS02290Stable P2CS identifier used across views.
GenomeGCF_003024715Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length466 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage179 / 466 aa (38.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa466 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
352-464 aa · 113 aa · 24.2% of protein
Raw token
HATPase_c:352:1.26e-34:464:113:109- Raw architecture: HisKA:242:3.39e-18:307:66:64#HATPase_c:352:1.26e-34:464:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003024715::NZ_PYLO01000001.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span481513-483649Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC7U56_02290RefSeq proteinWP_106999974.1
Context group ID
GCF_003024715::NZ_PYLO01000001.1::G00005Context members
C7U56_RS02290C7U56_RS02295
Partner locus tags
C7U56_RS02290C7U56_RS02295
Partner old locus tags
C7U56_02290C7U56_02295
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_106999974.1Primary protein accession used for annex mappings.
UniProt accessionA0A2T3FU42Primary UniProt accession resolved in the annex database.
UniProt IDA0A2T3FU42_9CLOTDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC7U56_RS02290Primary locus identifier stored in the genes table.
Old locus tagC7U56_02290Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PYLO01000001.1Sequence record reported by the local genomic context database.
Genomic interval481 513-482 913 nt1 401 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span481 513-483 649 ntGCF_003024715::NZ_PYLO01000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003024715::NZ_PYLO01000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PYLO01000001.1All displayed genes belong to this local TCS context.
Neighborhood span481 513-483 649 nt2 137 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
481 513 nt483 649 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
C7U56_RS02290GCF_003024715#C7U56_RS02290
HKClassicCurrent focus
481 513-482 913 nt · Reverse (-)
C7U56_RS02295GCF_003024715#C7U56_RS02295
RROmpR
482 921-483 649 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003024715#C7U56_RS02290The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1764335
Simplified PFAM architecture for HKOC_1764335
PFAM domain coverage: 176 / 466 aa (37.8%)
1 aa466 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[242-307] | HATPase_c[353-462]
- Domain count: 2
- Matched identifier: HKOC_1764335
- Positioned domains: HisKA 242-307 ; HATPase_c 353-462
Cluster members and taxonomy
Representative gene: GCF_003024715#C7U56_RS02290
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 126 740 · GCF_003024715
AssemblyASM302471v1 · Contighaploid
Genome composition3 277 016 bp · 48,5% GCClostridium fessum
Signal transduction countsGenes 61 · HK 32 · RR 27CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key