1 Response_reg#1
4-114 aa · 111 aa · 49.6% of protein
Raw token
Response_reg:4:1.1e-30:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C7U54_RS00110
Response regulator OmpR family
Faecalibacillus intestinalis · GCF_003024685
ClassRRTypeOmpRLength224 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003024685#C7U54_RS00110Stable P2CS identifier used across views.
GenomeGCF_003024685Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Faecalibacillus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 224 aa (82.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-219 aa · 74 aa · 33.0% of protein
Raw token
Trans_reg_C:146:1.08e-24:219:77:77- Raw architecture: Response_reg:4:1.1e-30:114:111:111#Trans_reg_C:146:1.08e-24:219:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003024685::NZ_PYLQ01000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span24643-26563Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC7U54_00110RefSeq proteinWP_022002963.1
Context group ID
GCF_003024685::NZ_PYLQ01000001.1::G00001Context members
C7U54_RS00110C7U54_RS00115
Partner locus tags
C7U54_RS00110C7U54_RS00115
Partner old locus tags
C7U54_00110C7U54_00115
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022002963.1Primary protein accession used for annex mappings.
UniProt accessionA0A2T3G7C0Primary UniProt accession resolved in the annex database.
UniProt IDA0A2T3G7C0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC7U54_RS00110Primary locus identifier stored in the genes table.
Old locus tagC7U54_00110Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PYLQ01000001.1Sequence record reported by the local genomic context database.
Genomic interval24 643-25 317 nt675 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span24 643-26 563 ntGCF_003024685::NZ_PYLQ01000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003024685::NZ_PYLQ01000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PYLQ01000001.1All displayed genes belong to this local TCS context.
Neighborhood span24 643-26 563 nt1 921 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
24 643 nt26 563 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
C7U54_RS00110GCF_003024685#C7U54_RS00110
RROmpRCurrent focus
24 643-25 317 nt · Forward (+)
C7U54_RS00115GCF_003024685#C7U54_RS00115
HKClassic
25 310-26 563 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003024685#C7U54_RS00110The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1541846
Simplified PFAM architecture for RROC_1541846
PFAM domain coverage: 183 / 224 aa (81.7%)
1 aa224 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-114] | Trans_reg_C[148-219]
- Domain count: 2
- Matched identifier: RROC_1541846
- Positioned domains: Response_reg 4-114 ; Response_reg 4-114 ; Trans_reg_C 148-219 ; Trans_reg_C 148-219
Cluster members and taxonomy
Representative gene: GCF_003024685#C7U54_RS00110
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 982 626 · GCF_003024685
AssemblyASM302468v1 · Contighaploid
Genome composition2 793 685 bp · 29,0% GCFaecalibacillus intestinalis
Signal transduction countsGenes 59 · HK 21 · RR 37CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusFaecalibacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Faecalibacillus
Related genes
Preview from the same derived genome key