1 HAMP#1
161-229 aa · 69 aa · 15.1% of protein
Raw token
HAMP:161:0.0000000000000571:229:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CQ058_RS20100
Histidine kinase, Classic
Bacillus sp. MYb56 · GCF_002976445
ClassHKTypeClassicLength456 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002976445#CQ058_RS20100Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length456 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage243 / 456 aa (53.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa456 aa
Domain-by-domain annotation3 items
2 HisKA#2
234-298 aa · 65 aa · 14.3% of protein
Raw token
HisKA:234:0.0000000000000178:298:65:643 HATPase_c#3
346-454 aa · 109 aa · 23.9% of protein
Raw token
HATPase_c:346:2.62e-36:454:109:109- Raw architecture: HAMP:161:0.0000000000000571:229:69:69#HisKA:234:0.0000000000000178:298:65:64#HATPase_c:346:2.62e-36:454:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002976445::NZ_PCOH01000018.1::G00049
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span74884-76943Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCQ058_20105RefSeq proteinWP_002188309.1
Context group ID
GCF_002976445::NZ_PCOH01000018.1::G00049Context members
CQ058_RS20095CQ058_RS20100
Partner locus tags
CQ058_RS20095CQ058_RS20100
Partner old locus tags
CQ058_20100CQ058_20105
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002188309.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCQ058_RS20100Primary locus identifier stored in the genes table.
Old locus tagCQ058_20105Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PCOH01000018.1Sequence record reported by the local genomic context database.
Genomic interval75 573-76 943 nt1 371 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span74 884-76 943 ntGCF_002976445::NZ_PCOH01000018.1::G00049
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002976445::NZ_PCOH01000018.1::G00049Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PCOH01000018.1All displayed genes belong to this local TCS context.
Neighborhood span74 884-76 943 nt2 060 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
74 884 nt76 943 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CQ058_RS20095GCF_002976445#CQ058_RS20095
RROmpR
74 884-75 561 nt · Forward (+)
CQ058_RS20100GCF_002976445#CQ058_RS20100
HKClassicCurrent focus
75 573-76 943 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002976445#CQ058_RS20100The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1890316
Simplified PFAM architecture for HKOC_1890316
PFAM domain coverage: 225 / 456 aa (49.3%)
1 aa456 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[178-229] | HisKA[235-298] | HATPase_c[346-454]
- Domain count: 3
- Matched identifier: HKOC_1890316
- Positioned domains: HAMP 178-229 ; HisKA 235-298 ; HATPase_c 346-454
Cluster members and taxonomy
Representative gene: GCF_002976445#CQ058_RS20100
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 827 287 · GCF_002976445
AssemblyASM297644v1 · Scaffoldhaploid
Genome composition5 929 383 bp · 35,0% GCBacillus sp. MYb56
Signal transduction countsGenes 131 · HK 71 · RR 60CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key