1 HisKA_3#1
178-241 aa · 64 aa · 17.0% of protein
Raw token
HisKA_3:178:1.3e-22:241:64:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CQ058_RS15615
Histidine kinase, Classic
Bacillus sp. MYb56 · GCF_002976445
ClassHKTypeClassicLength376 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002976445#CQ058_RS15615Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length376 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage150 / 376 aa (39.9%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa376 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
282-367 aa · 86 aa · 22.9% of protein
Raw token
HATPase_c:282:0.00000000185:367:104:109- Raw architecture: HisKA_3:178:1.3e-22:241:64:68#HATPase_c:282:0.00000000185:367:104:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002976445::NZ_PCOH01000011.1::G00042
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span145700-147429Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCQ058_15620RefSeq proteinWP_002191304.1
Context group ID
GCF_002976445::NZ_PCOH01000011.1::G00042Context members
CQ058_RS15610CQ058_RS15615
Partner locus tags
CQ058_RS15610CQ058_RS15615
Partner old locus tags
CQ058_15615CQ058_15620
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002191304.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCQ058_RS15615Primary locus identifier stored in the genes table.
Old locus tagCQ058_15620Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PCOH01000011.1Sequence record reported by the local genomic context database.
Genomic interval146 299-147 429 nt1 131 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span145 700-147 429 ntGCF_002976445::NZ_PCOH01000011.1::G00042
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002976445::NZ_PCOH01000011.1::G00042Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PCOH01000011.1All displayed genes belong to this local TCS context.
Neighborhood span145 700-147 429 nt1 730 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
145 700 nt147 429 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CQ058_RS15610GCF_002976445#CQ058_RS15610
RRNarL
145 700-146 302 nt · Reverse (-)
CQ058_RS15615GCF_002976445#CQ058_RS15615
HKClassicCurrent focus
146 299-147 429 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002976445#CQ058_RS15615The current gene is the representative for this cluster.
PFAM architectureDesK_N + HisKA_3 + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2643060
Simplified PFAM architecture for HKOC_2643060
PFAM domain coverage: 269 / 376 aa (71.5%)
1 aa376 aa
DesK_NHisKA_3HATPase_c
- Simplified architecture: DesK_N + HisKA_3 + HATPase_c
- Raw architecture: DesK_N[4-148] | HisKA_3[178-241] | HATPase_c[280-339]
- Domain count: 3
- Matched identifier: HKOC_2643060
- Positioned domains: DesK_N 4-148 ; HisKA_3 178-241 ; HATPase_c 280-339
Cluster members and taxonomy
Representative gene: GCF_002976445#CQ058_RS15615
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 827 287 · GCF_002976445
AssemblyASM297644v1 · Scaffoldhaploid
Genome composition5 929 383 bp · 35,0% GCBacillus sp. MYb56
Signal transduction countsGenes 131 · HK 71 · RR 60CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key