1 Response_reg#1
4-113 aa · 110 aa · 49.1% of protein
Raw token
Response_reg:4:8.2e-34:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C5Y99_RS10110
Response regulator OmpR family
Mediterraneibacter gnavus ATCC 29149 · GCF_002959615
ClassRRTypeOmpRLength224 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002959615#C5Y99_RS10110Stable P2CS identifier used across views.
GenomeGCF_002959615Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 224 aa (81.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa224 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-222 aa · 72 aa · 32.1% of protein
Raw token
Trans_reg_C:151:1.41e-28:222:73:77- Raw architecture: Response_reg:4:8.2e-34:113:111:111#Trans_reg_C:151:1.41e-28:222:73:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002959615::NZ_PUEL01000004.1::G00026
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1995188-1995862Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC5Y99_10105RefSeq proteinWP_004842054.1
Context group ID
GCF_002959615::NZ_PUEL01000004.1::G00026Context members
C5Y99_RS10110
Partner locus tags
C5Y99_RS10110
Partner old locus tags
C5Y99_10105
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004842054.1Primary protein accession used for annex mappings.
UniProt accessionA7B188Primary UniProt accession resolved in the annex database.
UniProt IDA7B188_MEDG7Display identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC5Y99_RS10110Primary locus identifier stored in the genes table.
Old locus tagC5Y99_10105Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PUEL01000004.1Sequence record reported by the local genomic context database.
Genomic interval1 995 188-1 995 862 nt675 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 995 188-1 995 862 ntGCF_002959615::NZ_PUEL01000004.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002959615::NZ_PUEL01000004.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PUEL01000004.1All displayed genes belong to this local TCS context.
Neighborhood span1 995 188-1 995 862 nt675 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 995 188 nt1 995 862 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
C5Y99_RS10110GCF_002959615#C5Y99_RS10110
RROmpRCurrent focus
1 995 188-1 995 862 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000169475#RUMGNA_RS05805Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1529315
Simplified PFAM architecture for RROC_1529315
PFAM domain coverage: 181 / 224 aa (80.8%)
1 aa224 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[151-222]
- Domain count: 2
- Matched identifier: RROC_1529315
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 151-222 ; Trans_reg_C 151-222
Cluster members and taxonomy
Representative gene: GCF_000169475#RUMGNA_RS05805
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 470 · GCF_002959615
AssemblyASM295961v1 · Contighaploid
Genome composition3 570 397 bp · 43,0% GCMediterraneibacter gnavus ATCC 29149
Signal transduction countsGenes 82 · HK 39 · RR 42CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key