1 Response_reg#1
1-59 aa · 59 aa · 35.1% of protein
Raw token
Response_reg:1:0.0000000000128:59:60:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C5Y99_RS01805
Response regulator OmpR family
Mediterraneibacter gnavus ATCC 29149 · GCF_002959615
ClassRRTypeOmpRLength168 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002959615#C5Y99_RS01805Stable P2CS identifier used across views.
GenomeGCF_002959615Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length168 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage131 / 168 aa (78.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa168 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
93-164 aa · 72 aa · 42.9% of protein
Raw token
Trans_reg_C:93:7.02e-28:164:77:77- Raw architecture: Response_reg:1:0.0000000000128:59:60:111#Trans_reg_C:93:7.02e-28:164:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002959615::NZ_PUEL01000004.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span345093-346956Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC5Y99_01805RefSeq proteinWP_322099831.1
Context group ID
GCF_002959615::NZ_PUEL01000004.1::G00003Context members
C5Y99_RS01805C5Y99_RS01810
Partner locus tags
C5Y99_RS01805C5Y99_RS01810
Partner old locus tags
C5Y99_01805C5Y99_01810
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_322099831.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC5Y99_RS01805Primary locus identifier stored in the genes table.
Old locus tagC5Y99_01805Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PUEL01000004.1Sequence record reported by the local genomic context database.
Genomic interval345 093-345 599 nt507 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span345 093-346 956 ntGCF_002959615::NZ_PUEL01000004.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002959615::NZ_PUEL01000004.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PUEL01000004.1All displayed genes belong to this local TCS context.
Neighborhood span345 093-346 956 nt1 864 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
345 093 nt346 956 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
C5Y99_RS01805GCF_002959615#C5Y99_RS01805
RROmpRCurrent focus
345 093-345 599 nt · Forward (+)
C5Y99_RS01810GCF_002959615#C5Y99_RS01810
HKClassic
345 583-346 956 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000169475#RUMGNA_RS02220Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2170309
Simplified PFAM architecture for RROC_2170309
PFAM domain coverage: 143 / 190 aa (75.3%)
1 aa190 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[8-79] | Trans_reg_C[116-186]
- Domain count: 2
- Matched identifier: RROC_2170309
- Positioned domains: Response_reg 8-79 ; Response_reg 8-79 ; Trans_reg_C 116-186 ; Trans_reg_C 116-186
Cluster members and taxonomy
Representative gene: GCF_000169475#RUMGNA_RS02220
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 470 · GCF_002959615
AssemblyASM295961v1 · Contighaploid
Genome composition3 570 397 bp · 43,0% GCMediterraneibacter gnavus ATCC 29149
Signal transduction countsGenes 82 · HK 39 · RR 42CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key