1 Response_reg#1
33-122 aa · 90 aa · 37.2% of protein
Raw token
Response_reg:33:4.53e-21:122:90:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C5Y99_RS09765
Response regulator LytTR family
Mediterraneibacter gnavus ATCC 29149 · GCF_002959615
ClassRRTypeLytTRLength242 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002959615#C5Y99_RS09765Stable P2CS identifier used across views.
GenomeGCF_002959615Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length242 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 242 aa (76.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa242 aa
Domain-by-domain annotation2 items
2 LytTR#2
140-235 aa · 96 aa · 39.7% of protein
Raw token
LytTR:140:9.06e-21:235:99:98- Raw architecture: Response_reg:33:4.53e-21:122:90:111#LytTR:140:9.06e-21:235:99:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002959615::NZ_PUEL01000004.1::G00023
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1928223-1928951Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC5Y99_09760RefSeq proteinWP_004842163.1
Context group ID
GCF_002959615::NZ_PUEL01000004.1::G00023Context members
C5Y99_RS09765
Partner locus tags
C5Y99_RS09765
Partner old locus tags
C5Y99_09760
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004842163.1Primary protein accession used for annex mappings.
UniProt accessionA7B1G6Primary UniProt accession resolved in the annex database.
UniProt IDA7B1G6_MEDG7Display identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC5Y99_RS09765Primary locus identifier stored in the genes table.
Old locus tagC5Y99_09760Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PUEL01000004.1Sequence record reported by the local genomic context database.
Genomic interval1 928 223-1 928 951 nt729 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 928 223-1 928 951 ntGCF_002959615::NZ_PUEL01000004.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002959615::NZ_PUEL01000004.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PUEL01000004.1All displayed genes belong to this local TCS context.
Neighborhood span1 928 223-1 928 951 nt729 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 928 223 nt1 928 951 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
C5Y99_RS09765GCF_002959615#C5Y99_RS09765
RRLytTRCurrent focus
1 928 223-1 928 951 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000169475#RUMGNA_RS06145Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0843717
Simplified PFAM architecture for RROC_0843717
PFAM domain coverage: 199 / 242 aa (82.2%)
1 aa242 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[9-112] | LytTR[141-235]
- Domain count: 2
- Matched identifier: RROC_0843717
- Positioned domains: Response_reg 9-112 ; Response_reg 9-112 ; LytTR 141-235 ; LytTR 141-235
Cluster members and taxonomy
Representative gene: GCF_000169475#RUMGNA_RS06145
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 470 · GCF_002959615
AssemblyASM295961v1 · Contighaploid
Genome composition3 570 397 bp · 43,0% GCMediterraneibacter gnavus ATCC 29149
Signal transduction countsGenes 82 · HK 39 · RR 42CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key