1 Response_reg#1
4-113 aa · 110 aa · 49.3% of protein
Raw token
Response_reg:4:1.07e-24:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C5Y99_RS06870
Response regulator OmpR family
Mediterraneibacter gnavus ATCC 29149 · GCF_002959615
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002959615#C5Y99_RS06870Stable P2CS identifier used across views.
GenomeGCF_002959615Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 223 aa (83.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-222 aa · 76 aa · 34.1% of protein
Raw token
Trans_reg_C:147:1.24e-28:222:77:77- Raw architecture: Response_reg:4:1.07e-24:113:111:111#Trans_reg_C:147:1.24e-28:222:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002959615::NZ_PUEL01000004.1::G00016
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1347241-1347912Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC5Y99_06865RefSeq proteinWP_004841848.1
Context group ID
GCF_002959615::NZ_PUEL01000004.1::G00016Context members
C5Y99_RS06870
Partner locus tags
C5Y99_RS06870
Partner old locus tags
C5Y99_06865
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004841848.1Primary protein accession used for annex mappings.
UniProt accessionA7B0Z1Primary UniProt accession resolved in the annex database.
UniProt IDA7B0Z1_MEDG7Display identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC5Y99_RS06870Primary locus identifier stored in the genes table.
Old locus tagC5Y99_06865Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PUEL01000004.1Sequence record reported by the local genomic context database.
Genomic interval1 347 241-1 347 912 nt672 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 347 241-1 347 912 ntGCF_002959615::NZ_PUEL01000004.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002959615::NZ_PUEL01000004.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PUEL01000004.1All displayed genes belong to this local TCS context.
Neighborhood span1 347 241-1 347 912 nt672 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 347 241 nt1 347 912 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
C5Y99_RS06870GCF_002959615#C5Y99_RS06870
RROmpRCurrent focus
1 347 241-1 347 912 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000169475#RUMGNA_RS05355Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1587609
Simplified PFAM architecture for RROC_1587609
PFAM domain coverage: 185 / 223 aa (83.0%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[147-221]
- Domain count: 2
- Matched identifier: RROC_1587609
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 147-221 ; Trans_reg_C 147-221
Cluster members and taxonomy
Representative gene: GCF_000169475#RUMGNA_RS05355
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 470 · GCF_002959615
AssemblyASM295961v1 · Contighaploid
Genome composition3 570 397 bp · 43,0% GCMediterraneibacter gnavus ATCC 29149
Signal transduction countsGenes 82 · HK 39 · RR 42CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key