1 Response_reg#1
1-58 aa · 58 aa · 40.8% of protein
Raw token
Response_reg:1:0.00000019:58:60:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AMR89_RS18085
Response regulator LytTR family
Clostridioides difficile · GCF_002891605
ClassRRTypeLytTRLength142 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002891605#AMR89_RS18085Stable P2CS identifier used across views.
GenomeGCF_002891605Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length142 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage112 / 142 aa (78.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa142 aa
Domain-by-domain annotation2 items
2 LytTR#2
78-131 aa · 54 aa · 38.0% of protein
Raw token
LytTR:78:0.000000001:131:55:98- Raw architecture: Response_reg:1:0.00000019:58:60:111#LytTR:78:0.000000001:131:55:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002891605::NZ_LJCK01000045.1::G00051
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span24459-24887Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_002891605::NZ_LJCK01000045.1::G00051Context members
AMR89_RS18085
Partner locus tags
AMR89_RS18085
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_250779932.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAMR89_RS18085Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_LJCK01000045.1Sequence record reported by the local genomic context database.
Genomic interval24 459-24 887 nt429 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span24 459-24 887 ntGCF_002891605::NZ_LJCK01000045.1::G00051
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002891605::NZ_LJCK01000045.1::G00051Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LJCK01000045.1All displayed genes belong to this local TCS context.
Neighborhood span24 459-24 887 nt429 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
24 459 nt24 887 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AMR89_RS18085GCF_002891605#AMR89_RS18085
RRLytTRCurrent focus
24 459-24 887 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002891605#AMR89_RS18085The current gene is the representative for this cluster.
PFAM architectureLytTR1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2259677
Simplified PFAM architecture for RROC_2259677
PFAM domain coverage: 54 / 142 aa (38.0%)
1 aa142 aa
LytTR
- Simplified architecture: LytTR
- Raw architecture: LytTR[80-133]
- Domain count: 1
- Matched identifier: RROC_2259677
- Positioned domains: LytTR 80-133 ; LytTR 80-133
Cluster members and taxonomy
Representative gene: GCF_002891605#AMR89_RS18085
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002891605
AssemblyASM289160v1 · Scaffoldhaploid
Genome composition4 144 242 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 102 · HK 49 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key