1 HAMP#1
104-173 aa · 70 aa · 17.3% of protein
Raw token
HAMP:104:0.00000000000000649:173:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AMR89_RS15745
Histidine kinase, Classic
Clostridioides difficile · GCF_002891605
ClassHKTypeClassicLength404 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002891605#AMR89_RS15745Stable P2CS identifier used across views.
GenomeGCF_002891605Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length404 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage241 / 404 aa (59.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa404 aa
Domain-by-domain annotation3 items
2 HisKA#2
180-244 aa · 65 aa · 16.1% of protein
Raw token
HisKA:180:1.22e-16:244:65:643 HATPase_c#3
292-397 aa · 106 aa · 26.2% of protein
Raw token
HATPase_c:292:7.66e-28:397:107:109- Raw architecture: HAMP:104:0.00000000000000649:173:70:69#HisKA:180:1.22e-16:244:65:64#HATPase_c:292:7.66e-28:397:107:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002891605::NZ_LJCK01000030.1::G00040
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span42208-44367Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_002891605::NZ_LJCK01000030.1::G00040Context members
AMR89_RS15740AMR89_RS15745
Partner locus tags
AMR89_RS15740AMR89_RS15745
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_102815357.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAMR89_RS15745Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_LJCK01000030.1Sequence record reported by the local genomic context database.
Genomic interval43 153-44 367 nt1 215 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span42 208-44 367 ntGCF_002891605::NZ_LJCK01000030.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002891605::NZ_LJCK01000030.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LJCK01000030.1All displayed genes belong to this local TCS context.
Neighborhood span42 208-44 367 nt2 160 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
42 208 nt44 367 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AMR89_RS15740GCF_002891605#AMR89_RS15740
RROmpR
42 208-42 882 nt · Forward (+)
AMR89_RS15745GCF_002891605#AMR89_RS15745
HKClassicCurrent focus
43 153-44 367 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0209215Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1645510
Simplified PFAM architecture for HKOC_1645510
PFAM domain coverage: 220 / 477 aa (46.1%)
1 aa477 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[197-246] | HisKA[253-316] | HATPase_c[365-470]
- Domain count: 3
- Matched identifier: HKOC_1645510
- Positioned domains: HAMP 197-246 ; HisKA 253-316 ; HATPase_c 365-470
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0209215
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002891605
AssemblyASM289160v1 · Scaffoldhaploid
Genome composition4 144 242 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 102 · HK 49 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key