1 Response_reg#1
4-117 aa · 114 aa · 48.5% of protein
Raw token
Response_reg:4:0.00000000000000834:117:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AMR89_RS08405
Response regulator LytTR family
Clostridioides difficile · GCF_002891605
ClassRRTypeLytTRLength235 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002891605#AMR89_RS08405Stable P2CS identifier used across views.
GenomeGCF_002891605Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage202 / 235 aa (86.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 LytTR#2
139-226 aa · 88 aa · 37.4% of protein
Raw token
LytTR:139:1.86e-22:226:94:98- Raw architecture: Response_reg:4:0.00000000000000834:117:117:111#LytTR:139:1.86e-22:226:94:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002891605::NZ_LJCK01000011.1::G00012
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span47723-48430Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_002891605::NZ_LJCK01000011.1::G00012Context members
AMR89_RS08405
Partner locus tags
AMR89_RS08405
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_070441999.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAMR89_RS08405Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_LJCK01000011.1Sequence record reported by the local genomic context database.
Genomic interval47 723-48 430 nt708 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span47 723-48 430 ntGCF_002891605::NZ_LJCK01000011.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002891605::NZ_LJCK01000011.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LJCK01000011.1All displayed genes belong to this local TCS context.
Neighborhood span47 723-48 430 nt708 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
47 723 nt48 430 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AMR89_RS08405GCF_002891605#AMR89_RS08405
RRLytTRCurrent focus
47 723-48 430 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002300855#BGT96_RS12850Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1022606
Simplified PFAM architecture for RROC_1022606
PFAM domain coverage: 202 / 235 aa (86.0%)
1 aa235 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-117] | LytTR[139-226]
- Domain count: 2
- Matched identifier: RROC_1022606
- Positioned domains: Response_reg 4-117 ; Response_reg 4-117 ; LytTR 139-226 ; LytTR 139-226
Cluster members and taxonomy
Representative gene: GCF_002300855#BGT96_RS12850
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 28 over 28 total members. Page 1 / 1.
GCF_002300855#BGT96_RS12850 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002891605
AssemblyASM289160v1 · Scaffoldhaploid
Genome composition4 144 242 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 102 · HK 49 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key