1 HisKA#1
10-74 aa · 65 aa · 28.4% of protein
Raw token
HisKA:10:0.0000000000421:74:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CCY17_RS02080
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_002865425
ClassHKTypeClassicLength229 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002865425#CCY17_RS02080Stable P2CS identifier used across views.
GenomeGCF_002865425Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 229 aa (73.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
120-223 aa · 104 aa · 45.4% of protein
Raw token
HATPase_c:120:2.87e-18:223:109:109- Raw architecture: HisKA:10:0.0000000000421:74:65:64#HATPase_c:120:2.87e-18:223:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002865425::NZ_NIHQ01000002.1::G00017
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span143879-144568Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCCY17_02070RefSeq proteinWP_022037812.1
Context group ID
GCF_002865425::NZ_NIHQ01000002.1::G00017Context members
CCY17_RS02080
Partner locus tags
CCY17_RS02080
Partner old locus tags
CCY17_02070
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022037812.1Primary protein accession used for annex mappings.
UniProt accessionA0A9Q4F6A4Primary UniProt accession resolved in the annex database.
UniProt IDA0A9Q4F6A4_MEDGNDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCCY17_RS02080Primary locus identifier stored in the genes table.
Old locus tagCCY17_02070Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NIHQ01000002.1Sequence record reported by the local genomic context database.
Genomic interval143 879-144 568 nt690 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span143 879-144 568 ntGCF_002865425::NZ_NIHQ01000002.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002865425::NZ_NIHQ01000002.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NIHQ01000002.1All displayed genes belong to this local TCS context.
Neighborhood span143 879-144 568 nt690 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
143 879 nt144 568 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CCY17_RS02080GCF_002865425#CCY17_RS02080
HKClassicCurrent focus
143 879-144 568 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002865305#CDL24_RS09415Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2926314
Simplified PFAM architecture for HKOC_2926314
PFAM domain coverage: 168 / 229 aa (73.4%)
1 aa229 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[10-74] | HATPase_c[121-223]
- Domain count: 2
- Matched identifier: HKOC_2926314
- Positioned domains: HisKA 10-74 ; HATPase_c 121-223
Cluster members and taxonomy
Representative gene: GCF_002865305#CDL24_RS09415
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_002865425
AssemblyASM286542v1 · Scaffoldhaploid
Genome composition3 040 241 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 72 · HK 34 · RR 37CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key