1 Response_reg#1
4-108 aa · 105 aa · 44.1% of protein
Raw token
Response_reg:4:7.74e-17:108:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CCY17_RS00310
Response regulator LytTR family
Mediterraneibacter gnavus · GCF_002865425
ClassRRTypeLytTRLength238 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002865425#CCY17_RS00310Stable P2CS identifier used across views.
GenomeGCF_002865425Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage197 / 238 aa (82.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 LytTR#2
138-229 aa · 92 aa · 38.7% of protein
Raw token
LytTR:138:9.06e-19:229:97:98- Raw architecture: Response_reg:4:7.74e-17:108:108:111#LytTR:138:9.06e-19:229:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002865425::NZ_NIHQ01000001.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span73794-74510Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCCY17_00310RefSeq proteinWP_054337680.1
Context group ID
GCF_002865425::NZ_NIHQ01000001.1::G00001Context members
CCY17_RS00310
Partner locus tags
CCY17_RS00310
Partner old locus tags
CCY17_00310
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_054337680.1Primary protein accession used for annex mappings.
UniProt accessionA0A9Q4F081Primary UniProt accession resolved in the annex database.
UniProt IDA0A9Q4F081_MEDGNDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCCY17_RS00310Primary locus identifier stored in the genes table.
Old locus tagCCY17_00310Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NIHQ01000001.1Sequence record reported by the local genomic context database.
Genomic interval73 794-74 510 nt717 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span73 794-74 510 ntGCF_002865425::NZ_NIHQ01000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002865425::NZ_NIHQ01000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NIHQ01000001.1All displayed genes belong to this local TCS context.
Neighborhood span73 794-74 510 nt717 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
73 794 nt74 510 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CCY17_RS00310GCF_002865425#CCY17_RS00310
RRLytTRCurrent focus
73 794-74 510 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002865305#CDL24_RS00475Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0939135
Simplified PFAM architecture for RROC_0939135
PFAM domain coverage: 194 / 238 aa (81.5%)
1 aa238 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-108] | LytTR[141-229]
- Domain count: 2
- Matched identifier: RROC_0939135
- Positioned domains: Response_reg 4-108 ; Response_reg 4-108 ; LytTR 141-229 ; LytTR 141-229
Cluster members and taxonomy
Representative gene: GCF_002865305#CDL24_RS00475
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_002865425
AssemblyASM286542v1 · Scaffoldhaploid
Genome composition3 040 241 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 72 · HK 34 · RR 37CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key