1 HAMP#1
281-350 aa · 70 aa · 12.0% of protein
Raw token
HAMP:281:0.000000000765:350:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDL21_RS14375
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_002865385
ClassHKTypeClassicLength583 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002865385#CDL21_RS14375Stable P2CS identifier used across views.
GenomeGCF_002865385Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length583 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage251 / 583 aa (43.1%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa583 aa
Domain-by-domain annotation3 items
2 His_kinase#2
372-451 aa · 80 aa · 13.7% of protein
Raw token
His_kinase:372:6.94e-29:451:80:803 HATPase_c#3
477-577 aa · 101 aa · 17.3% of protein
Raw token
HATPase_c:477:0.000000814:577:101:109- Raw architecture: HAMP:281:0.000000000765:350:70:69#His_kinase:372:6.94e-29:451:80:80#HATPase_c:477:0.000000814:577:101:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002865385::NZ_NIHV01000028.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3250-6628Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDL21_14360RefSeq proteinWP_180956370.1
Context group ID
GCF_002865385::NZ_NIHV01000028.1::G00026Context members
CDL21_RS14375CDL21_RS14380
Partner locus tags
CDL21_RS14375CDL21_RS14380
Partner old locus tags
CDL21_14360CDL21_14365
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_180956370.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDL21_RS14375Primary locus identifier stored in the genes table.
Old locus tagCDL21_14360Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NIHV01000028.1Sequence record reported by the local genomic context database.
Genomic interval3 250-5 001 nt1 752 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3 250-6 628 ntGCF_002865385::NZ_NIHV01000028.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002865385::NZ_NIHV01000028.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NIHV01000028.1All displayed genes belong to this local TCS context.
Neighborhood span3 250-6 628 nt3 379 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 250 nt6 628 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CDL21_RS14375GCF_002865385#CDL21_RS14375
HKClassicCurrent focus
3 250-5 001 nt · Forward (+)
CDL21_RS14380GCF_002865385#CDL21_RS14380
RRunclassified
5 006-6 628 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002865385#CDL21_RS14375The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1148274
Simplified PFAM architecture for HKOC_1148274
PFAM domain coverage: 132 / 583 aa (22.6%)
1 aa583 aa
HAMPHis_kinase
- Simplified architecture: HAMP + His_kinase
- Raw architecture: HAMP[298-349] | His_kinase[372-451]
- Domain count: 2
- Matched identifier: HKOC_1148274
- Positioned domains: HAMP 298-349 ; His_kinase 372-451
Cluster members and taxonomy
Representative gene: GCF_002865385#CDL21_RS14375
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_002865385
AssemblyASM286538v1 · Scaffoldhaploid
Genome composition3 060 122 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 84 · HK 40 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key