1 Response_reg#1
4-119 aa · 116 aa · 21.5% of protein
Raw token
Response_reg:4:5.26e-32:119:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDL25_RS15580
Response regulator, unclassified
Mediterraneibacter gnavus · GCF_002865355
ClassRRTypeunclassifiedLength540 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002865355#CDL25_RS15580Stable P2CS identifier used across views.
GenomeGCF_002865355Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length540 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage158 / 540 aa (29.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa540 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
433-474 aa · 42 aa · 7.8% of protein
Raw token
HTH_AraC:433:0.000000896:474:42:42- Raw architecture: Response_reg:4:5.26e-32:119:116:111#HTH_AraC:433:0.000000896:474:42:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002865355::NZ_NIHR01000048.1::G00035
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1132-4534Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDL25_15535RefSeq proteinWP_101872489.1
Context group ID
GCF_002865355::NZ_NIHR01000048.1::G00035Context members
CDL25_RS15575CDL25_RS15580
Partner locus tags
CDL25_RS15575CDL25_RS15580
Partner old locus tags
CDL25_15530CDL25_15535
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_101872489.1Primary protein accession used for annex mappings.
UniProt accessionA0A2N5NX35Primary UniProt accession resolved in the annex database.
UniProt IDA0A2N5NX35_MEDGNDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDL25_RS15580Primary locus identifier stored in the genes table.
Old locus tagCDL25_15535Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NIHR01000048.1Sequence record reported by the local genomic context database.
Genomic interval2 912-4 534 nt1 623 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 132-4 534 ntGCF_002865355::NZ_NIHR01000048.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002865355::NZ_NIHR01000048.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NIHR01000048.1All displayed genes belong to this local TCS context.
Neighborhood span1 132-4 534 nt3 403 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 132 nt4 534 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CDL25_RS15575GCF_002865355#CDL25_RS15575
HKClassic
1 132-2 907 nt · Forward (+)
CDL25_RS15580GCF_002865355#CDL25_RS15580
RRunclassifiedCurrent focus
2 912-4 534 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002865355#CDL25_RS15580The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0089723
Simplified PFAM architecture for RROC_0089723
PFAM domain coverage: 189 / 540 aa (35.0%)
1 aa540 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-119] | HTH_18[453-525]
- Domain count: 2
- Matched identifier: RROC_0089723
- Positioned domains: Response_reg 4-119 ; Response_reg 4-119 ; HTH_18 453-525 ; HTH_18 453-525
Cluster members and taxonomy
Representative gene: GCF_002865355#CDL25_RS15580
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_002865355
AssemblyASM286535v1 · Scaffoldhaploid
Genome composition3 415 781 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 83 · HK 39 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key