1 Response_reg#1
4-117 aa · 114 aa · 22.4% of protein
Raw token
Response_reg:4:6.92e-29:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDL20_RS12400
Response regulator, unclassified
Mediterraneibacter gnavus · GCF_002865285
ClassRRTypeunclassifiedLength508 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002865285#CDL20_RS12400Stable P2CS identifier used across views.
GenomeGCF_002865285Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length508 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage187 / 508 aa (36.8%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa508 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
411-452 aa · 42 aa · 8.3% of protein
Raw token
HTH_AraC:411:0.000000000285:452:42:423 HTH_AraC#3
472-502 aa · 31 aa · 6.1% of protein
Raw token
HTH_AraC:472:0.0000000678:502:31:42- Raw architecture: Response_reg:4:6.92e-29:117:114:111#HTH_AraC:411:0.000000000285:452:42:42#HTH_AraC:472:0.0000000678:502:31:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002865285::NZ_NIHW01000035.1::G00031
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span6621-9949Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDL20_12360RefSeq proteinWP_101882830.1
Context group ID
GCF_002865285::NZ_NIHW01000035.1::G00031Context members
CDL20_RS12395CDL20_RS12400
Partner locus tags
CDL20_RS12395CDL20_RS12400
Partner old locus tags
CDL20_12355CDL20_12360
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_101882830.1Primary protein accession used for annex mappings.
UniProt accessionA0A2N5PXK6Primary UniProt accession resolved in the annex database.
UniProt IDA0A2N5PXK6_MEDGNDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDL20_RS12400Primary locus identifier stored in the genes table.
Old locus tagCDL20_12360Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NIHW01000035.1Sequence record reported by the local genomic context database.
Genomic interval8 423-9 949 nt1 527 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span6 621-9 949 ntGCF_002865285::NZ_NIHW01000035.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002865285::NZ_NIHW01000035.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NIHW01000035.1All displayed genes belong to this local TCS context.
Neighborhood span6 621-9 949 nt3 329 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 621 nt9 949 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CDL20_RS12395GCF_002865285#CDL20_RS12395
HKClassic
6 621-8 426 nt · Forward (+)
CDL20_RS12400GCF_002865285#CDL20_RS12400
RRunclassifiedCurrent focus
8 423-9 949 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002865285#CDL20_RS12400The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0148838
Simplified PFAM architecture for RROC_0148838
PFAM domain coverage: 191 / 508 aa (37.6%)
1 aa508 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-115] | HTH_18[424-502]
- Domain count: 2
- Matched identifier: RROC_0148838
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; HTH_18 424-502 ; HTH_18 424-502
Cluster members and taxonomy
Representative gene: GCF_002865285#CDL20_RS12400
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_002865285
AssemblyASM286528v1 · Scaffoldhaploid
Genome composition3 072 153 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 74 · HK 37 · RR 37CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key