1 HisKA#1
90-145 aa · 56 aa · 18.1% of protein
Raw token
HisKA:90:0.00000000000000785:145:56:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDL20_RS06940
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_002865285
ClassHKTypeClassicLength309 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002865285#CDL20_RS06940Stable P2CS identifier used across views.
GenomeGCF_002865285Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length309 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage174 / 309 aa (56.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa309 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
192-309 aa · 118 aa · 38.2% of protein
Raw token
HATPase_c:192:4.07e-19:309:119:109- Raw architecture: HisKA:90:0.00000000000000785:145:56:64#HATPase_c:192:4.07e-19:309:119:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002865285::NZ_NIHW01000014.1::G00010
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span11280-12209Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDL20_06925RefSeq proteinWP_101882344.1
Context group ID
GCF_002865285::NZ_NIHW01000014.1::G00010Context members
CDL20_RS06940
Partner locus tags
CDL20_RS06940
Partner old locus tags
CDL20_06925
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_101882344.1Primary protein accession used for annex mappings.
UniProt accessionA0A2N5Q0B6Primary UniProt accession resolved in the annex database.
UniProt IDA0A2N5Q0B6_MEDGNDisplay identifier provided by UniProt.
GO / PubMed1 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDL20_RS06940Primary locus identifier stored in the genes table.
Old locus tagCDL20_06925Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NIHW01000014.1Sequence record reported by the local genomic context database.
Genomic interval11 280-12 209 nt930 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span11 280-12 209 ntGCF_002865285::NZ_NIHW01000014.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002865285::NZ_NIHW01000014.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NIHW01000014.1All displayed genes belong to this local TCS context.
Neighborhood span11 280-12 209 nt930 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
11 280 nt12 209 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CDL20_RS06940GCF_002865285#CDL20_RS06940
HKClassicCurrent focus
11 280-12 209 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002865285#CDL20_RS06940The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2879404
Simplified PFAM architecture for HKOC_2879404
PFAM domain coverage: 171 / 309 aa (55.3%)
1 aa309 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[88-145] | HATPase_c[192-304]
- Domain count: 2
- Matched identifier: HKOC_2879404
- Positioned domains: HisKA 88-145 ; HATPase_c 192-304
Cluster members and taxonomy
Representative gene: GCF_002865285#CDL20_RS06940
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_002865285
AssemblyASM286528v1 · Scaffoldhaploid
Genome composition3 072 153 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 74 · HK 37 · RR 37CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key