1 Response_reg#1
1-110 aa · 110 aa · 56.7% of protein
Raw token
Response_reg:1:0.0000000000829:110:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NRBB50_RS05680
Response regulator NarL family
Bifidobacterium breve · GCF_002838365
ClassRRTypeNarLLength194 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002838365#NRBB50_RS05680Stable P2CS identifier used across views.
GenomeGCF_002838365Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length194 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage163 / 194 aa (84.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa194 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
133-185 aa · 53 aa · 27.3% of protein
Raw token
HTH_LUXR:133:3.61e-18:185:53:58- Raw architecture: Response_reg:1:0.0000000000829:110:112:111#HTH_LUXR:133:3.61e-18:185:53:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002838365::NZ_CP021391.1::G00008
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1246050-1246616Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNRBB50_1114RefSeq proteinWP_157825688.1
Context group ID
GCF_002838365::NZ_CP021391.1::G00008Context members
NRBB50_RS05680
Partner locus tags
NRBB50_RS05680
Partner old locus tags
NRBB50_1114
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_157825688.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNRBB50_RS05680Primary locus identifier stored in the genes table.
Old locus tagNRBB50_1114Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP021391.1Sequence record reported by the local genomic context database.
Genomic interval1 246 050-1 246 616 nt567 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 246 050-1 246 616 ntGCF_002838365::NZ_CP021391.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002838365::NZ_CP021391.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP021391.1All displayed genes belong to this local TCS context.
Neighborhood span1 246 050-1 246 616 nt567 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 246 050 nt1 246 616 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
NRBB50_RS05680GCF_002838365#NRBB50_RS05680
RRNarLCurrent focus
1 246 050-1 246 616 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002838365#NRBB50_RS05680The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2161339
Simplified PFAM architecture for RROC_2161339
PFAM domain coverage: 162 / 194 aa (83.5%)
1 aa194 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[1-109] | GerE[134-186]
- Domain count: 2
- Matched identifier: RROC_2161339
- Positioned domains: Response_reg 1-109 ; Response_reg 1-109 ; GerE 134-186 ; GerE 134-186
Cluster members and taxonomy
Representative gene: GCF_002838365#NRBB50_RS05680
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_002838365
AssemblyASM283836v1 · Complete Genomehaploid
Genome composition2 409 058 bp · 59,0% GCBifidobacterium breve
Signal transduction countsGenes 27 · HK 9 · RR 16CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key